COMORE Project-team, INRIA Sophia Antipolis, Sophia Antipolis, France.
PLoS One. 2011 Feb 14;6(2):e17075. doi: 10.1371/journal.pone.0017075.
Experimental observations performed in the p53-Mdm2 network, one of the key protein modules involved in the control of proliferation of abnormal cells in mammals, revealed the existence of two frequencies of oscillations of p53 and Mdm2 in irradiated cells depending on the irradiation dose. These observations raised the question of the existence of birhythmicity, i.e. the coexistence of two oscillatory regimes for the same external conditions, in the p53-Mdm2 network which would be at the origin of these two distinct frequencies. A theoretical answer has been recently suggested by Ouattara, Abou-Jaoudé and Kaufman who proposed a 3-dimensional differential model showing birhythmicity to reproduce the two frequencies experimentally observed. The aim of this work is to analyze the mechanisms at the origin of the birhythmic behavior through a theoretical analysis of this differential model. To do so, we reduced this model, in a first step, into a 3-dimensional piecewise linear differential model where the Hill functions have been approximated by step functions, and, in a second step, into a 2-dimensional piecewise linear differential model by setting one autonomous variable as a constant in each domain of the phase space. We find that two features related to the phase space structure of the system are at the origin of the birhythmic behavior: the existence of two embedded cycles in the transition graph of the reduced models; the presence of a bypass in the orbit of the large amplitude oscillatory regime of low frequency. Based on this analysis, an experimental strategy is proposed to test the existence of birhythmicity in the p53-Mdm2 network. From a methodological point of view, this approach greatly facilitates the computational analysis of complex oscillatory behavior and could represent a valuable tool to explore mathematical models of biological rhythms showing sufficiently steep nonlinearities.
在 p53-Mdm2 网络中进行的实验观察,该网络是控制哺乳动物异常细胞增殖的关键蛋白质模块之一,揭示了在受照射的细胞中 p53 和 Mdm2 的振荡存在两种频率,这取决于照射剂量。这些观察结果提出了一个问题,即在 p53-Mdm2 网络中是否存在双节奏性,即在相同的外部条件下共存两种振荡状态,这可能是这两种不同频率的起源。Ouattara、Abou-Jaoudé 和 Kaufman 最近提出了一个 3 维微分模型,该模型提出了双节奏性,以重现实验中观察到的两种频率,从而对此问题给出了理论答案。本工作的目的是通过对该微分模型的理论分析,研究双节奏行为的起源机制。为此,我们首先将该模型简化为一个 3 维分段线性微分模型,其中 Hill 函数被分段线性函数近似,然后在第二步中,将该模型简化为一个 2 维分段线性微分模型,通过将一个自治变量设置为相空间的每个区域中的常数。我们发现,系统的相空间结构中的两个特征是双节奏行为的起源:在简化模型的过渡图中存在两个嵌入式周期;在低频大振幅振荡状态的轨道中存在旁路。基于此分析,提出了一种实验策略来测试 p53-Mdm2 网络中双节奏性的存在。从方法论的角度来看,这种方法极大地简化了对复杂振荡行为的计算分析,并且可能成为探索具有足够陡峭非线性的生物节律数学模型的有价值工具。