Department of Bioengineering, University of Pennsylvania, Philadelphia, PA 19104-6321, USA.
Mol Syst Biol. 2011 Mar 29;7:480. doi: 10.1038/msb.2011.13.
The ability to engineer an all-or-none cellular response to a given signaling ligand is important in applications ranging from biosensing to tissue engineering. However, synthetic gene network 'switches' have been limited in their applicability and tunability due to their reliance on specific components to function. Here, we present a strategy for reversible switch design that instead relies only on a robust, easily constructed network topology with two positive feedback loops and we apply the method to create highly ultrasensitive (n(H)>20), bistable cellular responses to a synthetic ligand/receptor complex. Independent modulation of the two feedback strengths enables rational tuning and some decoupling of steady-state (ultrasensitivity, signal amplitude, switching threshold, and bistability) and kinetic (rates of system activation and deactivation) response properties. Our integrated computational and synthetic biology approach elucidates design rules for building cellular switches with desired properties, which may be of utility in engineering signal-transduction pathways.
能够对给定的信号配体进行全有或全无的细胞反应工程在从生物传感到组织工程的各种应用中都很重要。然而,由于合成基因网络“开关”依赖于特定的组件来发挥作用,因此其适用性和可调性受到限制。在这里,我们提出了一种基于稳健、易于构建的具有两个正反馈回路的网络拓扑结构的可逆开关设计策略,并将该方法应用于创建对合成配体/受体复合物具有超高灵敏度(n(H)>20)、双稳态的细胞反应。通过独立调节两个反馈强度,可以对稳态(超灵敏度、信号幅度、开关阈值和双稳态)和动力学(系统激活和失活的速率)响应特性进行合理的调整和一定程度的解耦。我们的集成计算和合成生物学方法阐明了构建具有所需特性的细胞开关的设计规则,这可能对工程信号转导途径有用。