Department of Chemistry , Northwestern University , Evanston , Illinois 60208 , United States.
Department of Chemistry & Biochemistry , Montana State University , Bozeman , Montana 59717 , United States.
J Am Chem Soc. 2019 Oct 9;141(40):16117-16124. doi: 10.1021/jacs.9b08541. Epub 2019 Sep 26.
Radical SAM (RS) enzymes use -adenosyl-l-methionine (SAM) and a [4Fe-4S] cluster to initiate a broad spectrum of radical transformations throughout all kingdoms of life. We report here that low-temperature photoinduced electron transfer from the [4Fe-4S] cluster to bound SAM in the active site of the hydrogenase maturase RS enzyme, HydG, results in specific homolytic cleavage of the S-CH bond of SAM, rather than the S-C5' bond as in the enzyme-catalyzed (thermal) HydG reaction. This result is in stark contrast to a recent report in which photoinduced ET in the RS enzyme pyruvate formate-lyase activating enzyme cleaved the S-C5' bond to generate a 5'-deoxyadenosyl radical, and provides the first direct evidence for homolytic S-CH bond cleavage in a RS enzyme. Photoinduced ET in HydG generates a trapped CH radical, as well as a small population of an organometallic species with an Fe-CH bond, denoted . The CH radical is surprisingly found to exhibit rotational diffusion in the HydG active site at temperatures as low as 40 K, and is rapidly quenched: whereas 5'-dAdo is stable indefinitely at 77 K, CH quenches with a half-time of ∼2 min at this temperature. The rapid quenching and rotational/translational freedom of CH shows that enzymes would be unable to harness this radical as a regio- and stereospecific H atom abstractor during catalysis, in contrast to the exquisite control achieved with the enzymatically generated 5'-dAdo.
激进的 SAM (RS) 酶利用 - 腺苷基 - L - 蛋氨酸 (SAM) 和一个 [4Fe-4S] 簇,在所有生命领域引发广泛的自由基转化。我们在此报告,在氢化酶成熟酶 RS 酶 HydG 的活性部位中,[4Fe-4S] 簇低温光诱导电子转移到结合的 SAM 中,导致 SAM 的 S-CH 键发生特异性均裂断裂,而不是酶催化 (热) HydG 反应中的 S-C5' 键。这一结果与最近的一项报告形成鲜明对比,该报告表明,在 RS 酶丙酮酸甲酸裂解酶激活酶中,光诱导 ET 断裂了 S-C5' 键,生成了 5'-脱氧腺苷自由基,并为 RS 酶中的均裂 S-CH 键断裂提供了第一个直接证据。在 HydG 中,光诱导 ET 产生了一个被捕获的 CH 自由基,以及一小部分具有 Fe-CH 键的有机金属物种,记为 。令人惊讶的是,在 40 K 以下的温度下,CH 自由基在 HydG 活性部位中表现出旋转扩散,并且迅速猝灭:尽管 5'-dAdo 在 77 K 下无限稳定,但在该温度下 CH 的猝灭半衰期约为 2 分钟。CH 的快速猝灭和旋转/平移自由度表明,与酶催化过程中产生的酶促生成的 5'-dAdo 所实现的精确控制相比,酶无法将这种自由基用作区域和立体特异性 H 原子的提取剂。