Robertson Wesley D, Warncke Kurt
Department of Physics, Emory University, Atlanta, Georgia 30322, USA.
Biochemistry. 2009 Jan 13;48(1):140-7. doi: 10.1021/bi801659e.
The quantum yield and kinetics of decay of cob(II)alamin formed by pulsed-laser photolysis of adenosylcobalamin (AdoCbl; coenzyme B(12)) in AdoCbl-dependent ethanolamine ammonia-lyase (EAL) from Salmonella typhimurium have been studied on the 10(-7)-10(-1) s time scale at 295 K by using transient ultraviolet-visible absorption spectroscopy. The aim is to probe the mechanism of formation and stabilization of the cob(II)alamin-5'-deoxyadenosyl radical pair, which is a key intermediate in EAL catalysis, and the influence of substrate binding on this process. Substrate binding is required for cobalt-carbon bond cleavage in the native system. Photolysis of AdoCbl in EAL leads to a quantum yield at 10(-7) s for cob(II)alamin of 0.08 +/- 0.01, which is 3-fold smaller than for AdoCbl in aqueous solution (0.23 +/- 0.01). The protein binding site therefore suppresses photoproduct radical pair formation. Three photoproduct states, P(f), P(s), and P(c), are identified in holo-EAL by the different cob(II)alamin decay kinetics (subscripts denote fast, slow, and constant, respectively). These states have the following first-order decay rate constants and quantum yields: 2.2 x 10(3) s(-1) and 0.02 for P(f), 4.2 x 10(2) s(-1) and 0.01 for P(s), and constant amplitude, with no recombination, and 0.05 for P(c), respectively. Binding of the substrate analogue (S)-1-amino-2-propanol to EAL eliminates the P(f) state and lowers the quantum yield of P(c) (0.03) relative to that of P(s) (0.01) but does not significantly change the quantum yield or decay rate constant of P(s), relative to those of holo-EAL. The substrate analogue thus influences the quantum yield at 10(-7) s by changing the cage escape rate from the geminate cob(II)alamin-5'-deoxyadenosyl radical pair state. However, the predicted substrate analogue binding-induced increase in the quantum yield is not observed. It is proposed that the substrate analogue does not induce the radical pair stabilizing changes in the protein that are characteristic of true substrates.
利用瞬态紫外可见吸收光谱,在295 K温度下,于10⁻⁷ - 10⁻¹ s时间尺度上研究了鼠伤寒沙门氏菌中腺苷钴胺素(AdoCbl;辅酶B₁₂)经脉冲激光光解形成的钴胺素(cob(II)alamin)的量子产率和衰变动力学。目的是探究钴胺素 - 5'-脱氧腺苷自由基对的形成和稳定机制,该自由基对是乙醇胺氨裂解酶(EAL)催化过程中的关键中间体,以及底物结合对这一过程的影响。在天然体系中,底物结合是钴 - 碳键断裂所必需的。EAL中AdoCbl的光解导致钴胺素在10⁻⁷ s时的量子产率为0.08 ± 0.01,这比水溶液中AdoCbl的量子产率(0.23 ± 0.01)小3倍。因此,蛋白质结合位点抑制了光产物自由基对的形成。通过不同的钴胺素衰变动力学(下标分别表示快、慢和恒定),在全酶EAL中鉴定出三种光产物状态,即P(f)、P(s)和P(c)。这些状态具有以下一级衰变速率常数和量子产率:P(f)为2.2 × 10³ s⁻¹和0.02,P(s)为4.2 × 10² s⁻¹和0.01,P(c)具有恒定幅度且无复合,量子产率为0.05。底物类似物(S)-1-氨基-2-丙醇与EAL的结合消除了P(f)状态,并使P(c)的量子产率(0.03)相对于P(s)的量子产率(0.01)降低,但相对于全酶EAL,并未显著改变P(s)的量子产率或衰变速率常数。因此,底物类似物通过改变从紧密结合的钴胺素 - 5'-脱氧腺苷自由基对状态的笼逃逸率来影响10⁻⁷ s时的量子产率。然而,未观察到预测的底物类似物结合导致的量子产率增加。据推测,底物类似物不会诱导蛋白质中出现真正底物所特有的自由基对稳定变化。