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酵母性黏附素的加速和适应性进化。

Accelerated and adaptive evolution of yeast sexual adhesins.

机构信息

Department of Biology, Brooklyn College, City University of New York, NY, USA.

出版信息

Mol Biol Evol. 2011 Nov;28(11):3127-37. doi: 10.1093/molbev/msr145. Epub 2011 Jun 1.

Abstract

There is a recent emergence of interest in the genes involved in gametic recognition as drivers of reproductive isolation. The recent population genomic sequencing of two species of sexually primitive yeasts (Liti G, Carter DM, Moses AM, Warringer J, Parts L, James SA, Davey RP, Roberts IN, Burt A, Koufopanou V et al. [23 co-authors]. 2009. Population genomics of domestic and wild yeasts. Nature 458:337-341.) has provided data for systematic study of the roles these genes play in the early evolution of sex and speciation. Here, we discovered that among genes encoding cell surface proteins, the sexual adhesin genes have evolved significantly more rapidly than others, both within and between Saccharomyces cerevisiae and its closest relative S. paradoxus. This result was supported by analyses using the PAML pairwise model, a modified McDonald-Kreitman test, and the PAML branch model. Moreover, using a combination of a new statistic of neutrality, an information theory-based measure of evolutionary variability, and functional characterization of amino acid changes, we found that a higher proportion of amino acid changes are fixed in the sexual adhesins than in other proteins and a greater proportion of the fixed amino acid changes either between the two species or the two subgroups of S. paradoxus are functionally dissimilar or radically different. These results suggest that the accelerated evolution of sexual adhesin genes may facilitate speciation, or incipient speciation, and promote sexual selection in general.

摘要

最近人们对配子识别相关基因作为生殖隔离驱动因素产生了浓厚的兴趣。最近对两种有性原始酵母(Liti G、Carter DM、Moses AM、Warringer J、Parts L、James SA、Davey RP、Roberts IN、Burt A、Koufopanou V 等 23 位合著者)的群体基因组测序,为系统研究这些基因在性和物种形成的早期进化中所起的作用提供了数据。在这里,我们发现,在编码细胞表面蛋白的基因中,性黏附素基因的进化速度明显快于其他基因,无论是在酿酒酵母及其近亲 S. paradoxus 内部还是在它们之间。这一结果得到了 PAML 成对模型、改进的 McDonald-Kreitman 检验和 PAML 分支模型分析的支持。此外,我们使用一种新的中性统计量、一种基于信息理论的进化可变性度量以及氨基酸变化的功能特征,发现性黏附素中固定的氨基酸变化比例高于其他蛋白质,而且在这两个物种或 S. paradoxus 的两个亚群之间,固定的氨基酸变化中有更大比例在功能上是不同的或截然不同的。这些结果表明,性黏附素基因的加速进化可能促进了物种形成,或正在进行的物种形成,并促进了一般的性选择。

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Accelerated and adaptive evolution of yeast sexual adhesins.酵母性黏附素的加速和适应性进化。
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The molecular basis of sex: linking yeast to human.性别的分子基础:从酵母到人类的联系。
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Estimation of the neutrality index.中性指标的估算。
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The evolution of sex: a perspective from the fungal kingdom.性别的进化:来自真菌王国的视角。
Microbiol Mol Biol Rev. 2010 Jun;74(2):298-340. doi: 10.1128/MMBR.00005-10.
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Population genomics of domestic and wild yeasts.家养酵母和野生酵母的群体基因组学
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