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X-CHIP:用于高通量蛋白质结晶和芯片上X射线衍射数据收集的集成平台。

X-CHIP: an integrated platform for high-throughput protein crystallization and on-the-chip X-ray diffraction data collection.

作者信息

Kisselman Gera, Qiu Wei, Romanov Vladimir, Thompson Christine M, Lam Robert, Battaile Kevin P, Pai Emil F, Chirgadze Nickolay Y

机构信息

Campbell Family Cancer Research Institute, Ontario Cancer Institute, Princess Margaret Hospital, University Health Network, Toronto, Ontario M5G 2C4, Canada.

出版信息

Acta Crystallogr D Biol Crystallogr. 2011 Jun;67(Pt 6):533-9. doi: 10.1107/S0907444911011589. Epub 2011 May 12.

DOI:10.1107/S0907444911011589
PMID:21636893
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3107051/
Abstract

The X-CHIP (X-ray Crystallization High-throughput Integrated Platform) is a novel microchip that has been developed to combine multiple steps of the crystallographic pipeline from crystallization to diffraction data collection on a single device to streamline the entire process. The system has been designed for crystallization condition screening, visual crystal inspection, initial X-ray screening and data collection in a high-throughput fashion. X-ray diffraction data acquisition can be performed directly on-the-chip at room temperature using an in situ approach. The capabilities of the chip eliminate the necessity for manual crystal handling and cryoprotection of crystal samples, while allowing data collection from multiple crystals in the same drop. This technology would be especially beneficial for projects with large volumes of data, such as protein-complex studies and fragment-based screening. The platform employs hydrophilic and hydrophobic concentric ring surfaces on a miniature plate transparent to visible light and X-rays to create a well defined and stable microbatch crystallization environment. The results of crystallization and data-collection experiments demonstrate that high-quality well diffracting crystals can be grown and high-resolution diffraction data sets can be collected using this technology. Furthermore, the quality of a single-wavelength anomalous dispersion data set collected with the X-CHIP at room temperature was sufficient to generate interpretable electron-density maps. This technology is highly resource-efficient owing to the use of nanolitre-scale drop volumes. It does not require any modification for most in-house and synchrotron beamline systems and offers a promising opportunity for full automation of the X-ray structure-determination process.

摘要

X-CHIP(X射线结晶高通量集成平台)是一种新型微芯片,其开发目的是将结晶学流程中从结晶到衍射数据收集的多个步骤整合到单个设备上,以简化整个过程。该系统设计用于以高通量方式进行结晶条件筛选、晶体目视检查、初始X射线筛选和数据收集。使用原位方法可在室温下直接在芯片上进行X射线衍射数据采集。该芯片的功能消除了对晶体样品进行手动处理和冷冻保护的必要性,同时允许从同一液滴中的多个晶体收集数据。这项技术对于诸如蛋白质复合物研究和基于片段的筛选等大量数据的项目特别有益。该平台在对可见光和X射线透明的微型板上采用亲水和疏水同心环表面,以创建一个定义明确且稳定的微量分批结晶环境。结晶和数据收集实验结果表明,使用该技术可以生长出高质量的衍射晶体,并收集到高分辨率的衍射数据集。此外,在室温下用X-CHIP收集的单波长反常色散数据集的质量足以生成可解释的电子密度图。由于使用纳升规模的液滴体积,这项技术具有很高的资源利用效率。它不需要对大多数内部和同步加速器光束线系统进行任何修改,并为X射线结构测定过程的完全自动化提供了一个有希望的机会。

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本文引用的文献

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BMC Struct Biol. 2011 May 26;11:27. doi: 10.1186/1472-6807-11-27.
2
Progress in rational methods of cryoprotection in macromolecular crystallography.大分子晶体学中合理冷冻保护方法的进展。
Acta Crystallogr D Biol Crystallogr. 2010 Apr;66(Pt 4):366-73. doi: 10.1107/S090744490903995X. Epub 2010 Mar 24.
3
Protein crystallization using microfluidic technologies based on valves, droplets, and SlipChip.
IUCrJ. 2016 Oct 26;3(Pt 6):393-401. doi: 10.1107/S2052252516016304. eCollection 2016 Nov 1.
4
Exploiting Microbeams for Membrane Protein Structure Determination.利用微束进行膜蛋白结构测定。
Adv Exp Med Biol. 2016;922:105-117. doi: 10.1007/978-3-319-35072-1_8.
5
Room-temperature macromolecular crystallography using a micro-patterned silicon chip with minimal background scattering.使用具有最小背景散射的微图案硅芯片进行室温大分子晶体学研究。
J Appl Crystallogr. 2016 May 23;49(Pt 3):968-975. doi: 10.1107/S1600576716006348. eCollection 2016 Jun 1.
6
Graphene-based microfluidics for serial crystallography.基于石墨烯的微流控技术用于串联结晶学。
Lab Chip. 2016 Aug 2;16(16):3082-96. doi: 10.1039/c6lc00451b.
7
Applications of thin-film sandwich crystallization platforms.薄膜夹心结晶平台的应用
Acta Crystallogr F Struct Biol Commun. 2016 Apr;72(Pt 4):313-9. doi: 10.1107/S2053230X16004386. Epub 2016 Mar 24.
8
High-density grids for efficient data collection from multiple crystals.用于从多个晶体高效收集数据的高密度网格。
Acta Crystallogr D Struct Biol. 2016 Jan;72(Pt 1):2-11. doi: 10.1107/S2059798315020847. Epub 2016 Jan 1.
9
In situ X-ray data collection and structure phasing of protein crystals at Structural Biology Center 19-ID.在结构生物学中心19-ID进行蛋白质晶体的原位X射线数据收集和结构定相。
J Synchrotron Radiat. 2015 Nov;22(6):1386-95. doi: 10.1107/S1600577515016598. Epub 2015 Oct 15.
10
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Acta Crystallogr F Struct Biol Commun. 2014 Dec 1;70(Pt 12):1707-13. doi: 10.1107/S2053230X14025126. Epub 2014 Nov 28.
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4
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5
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Structure. 2008 Jun;16(6):873-84. doi: 10.1016/j.str.2008.03.008.
6
In situ X-ray analysis of protein crystals in low-birefringent and X-ray transmissive plastic microchannels.低双折射且X射线透射的塑料微通道中蛋白质晶体的原位X射线分析
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7
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Methods. 2004 Nov;34(3):323-8. doi: 10.1016/j.ymeth.2004.03.023.
10
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Angew Chem Int Ed Engl. 2004 May 3;43(19):2508-11. doi: 10.1002/anie.200453974.