Institute of Biomedical and Clinical Sciences, Peninsula College of Medicine and Dentistry, University of Exeter, Exeter, UK.
Aging Cell. 2011 Oct;10(5):868-78. doi: 10.1111/j.1474-9726.2011.00726.x. Epub 2011 Jul 19.
Aging is a major risk factor for chronic disease in the human population, but there are little human data on gene expression alterations that accompany the process. We examined human peripheral blood leukocyte in-vivo RNA in a large-scale transcriptomic microarray study (subjects aged 30-104 years). We tested associations between probe expression intensity and advancing age (adjusting for confounding factors), initially in a discovery set (n= 58), following-up findings in a replication set (n=240). We confirmed expression of key results by real-time PCR. Of 16,571 expressed probes, only 295 (2%) were robustly associated with age. Just six probes were required for a highly efficient model for distinguishing between young and old (area under the curve in replication set; 95%). The focused nature of age-related gene expression may therefore provide potential biomarkers of aging. Similarly, only 7 of 1065 biological or metabolic pathways were age-associated, in gene set enrichment analysis, notably including the processing of messenger RNAs (mRNAs); [P<0.002, false discovery rate (FDR) q<0.05]. This is supported by our observation of age-associated disruption to the balance of alternatively expressed isoforms for selected genes, suggesting that modification of mRNA processing may be a feature of human aging.
衰老是人类慢性病的一个主要危险因素,但人类关于伴随这一过程的基因表达变化的数据很少。我们在一项大规模转录组微阵列研究中(研究对象年龄在 30-104 岁之间)检查了人类外周血白细胞的体内 RNA。我们测试了探针表达强度与年龄增长之间的关联(在调整混杂因素后),最初在发现组(n=58)中进行,然后在复制组(n=240)中进行验证。我们通过实时 PCR 证实了关键结果的表达。在 16571 个表达探针中,只有 295 个(2%)与年龄有明显关联。只需 6 个探针就可以建立一个非常高效的模型,用于区分年轻和年老(复制组中的曲线下面积;95%)。因此,与年龄相关的基因表达的集中性质可能为衰老提供潜在的生物标志物。同样,在基因集富集分析中,只有 7 个(1065 个)生物或代谢途径与年龄相关,其中包括信使 RNA(mRNA)的处理;[P<0.002,错误发现率(FDR)q<0.05]。这得到了我们对选定基因的替代表达异构体的平衡随年龄变化的观察结果的支持,这表明 mRNA 处理的修饰可能是人类衰老的一个特征。