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一种用于将四参数逻辑模型拟合到二元剂量反应数据的期望最大化(EM)算法。

An EM Algorithm for Fitting a 4-Parameter Logistic Model to Binary Dose-Response Data.

作者信息

Dinse Gregg E

机构信息

Biostatistics Branch, National Institute of Environmental Health Sciences, Mail Drop A3-03, P.O. Box 12233, Research Triangle Park, NC 27709 USA

出版信息

J Agric Biol Environ Stat. 2011 Jun 1;16(2):221-232. doi: 10.1007/s13253-010-0045-3.

Abstract

This article is motivated by the need of biological and environmental scientists to fit a popular nonlinear model to binary dose-response data. The 4-parameter logistic model, also known as the Hill model, generalizes the usual logistic regression model to allow the lower and upper response asymptotes to be greater than zero and less than one, respectively. This article develops an EM algorithm, which is naturally suited for maximum likelihood estimation under the Hill model after conceptualizing the problem as a mixture of subpopulations in which some subjects respond regardless of dose, some fail to respond regardless of dose, and some respond with a probability that depends on dose. The EM algorithm leads to a pair of functionally independent 2-parameter optimizations and is easy to program. Not only can this approach be computationally appealing compared to simultaneous optimization with respect to all four parameters, but it also facilitates estimating covariances, incorporating predictors, and imposing constraints. This article is motivated by, and the EM algorithm is illustrated with, data from a toxicology study of the dose effects of selenium on the death rates of flies. Other biological and environmental applications, as well as medical and agricultural applications, are also described briefly. Computer code for implementing the EM algorithm is available as supplemental material online.

摘要

本文的创作动机源于生物和环境科学家需要将一个常用的非线性模型应用于二元剂量反应数据。四参数逻辑模型,也称为希尔模型,对通常的逻辑回归模型进行了推广,使得下限和上限反应渐近线分别大于零且小于一。在将该问题概念化为亚群体的混合问题后,本文开发了一种期望最大化(EM)算法,该算法自然适用于希尔模型下的最大似然估计。在这个混合问题中,一些受试者无论剂量如何都会有反应,一些受试者无论剂量如何都没有反应,还有一些受试者的反应概率取决于剂量。EM算法导致一对功能独立的双参数优化,并且易于编程。与对所有四个参数进行同时优化相比,这种方法不仅在计算上更具吸引力,而且还便于估计协方差、纳入预测变量和施加约束。本文的创作动机来自于一项关于硒对果蝇死亡率剂量效应的毒理学研究的数据,并用该数据对EM算法进行了说明。还简要描述了其他生物和环境应用以及医学和农业应用。实现EM算法的计算机代码可作为在线补充材料获取。

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