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揭示氧化还原-波尔效应的结构起源:来自脱硫杆菌的细胞色素的首个溶液结构。

Revealing the structural origin of the redox-Bohr effect: the first solution structure of a cytochrome from Geobacter sulfurreducens.

机构信息

Requimte-CQFB, Department of Chemistry, Faculty of Sciences and Technology, New University of Lisbon, Campus Caparica, 2829-516 Caparica, Portugal.

出版信息

Biochem J. 2012 Jan 1;441(1):179-87. doi: 10.1042/BJ20111103.

Abstract

Gs (Geobacter sulfurreducens) can transfer electrons to the exterior of its cells, a property that makes it a preferential candidate for the development of biotechnological applications. Its genome encodes over 100 cytochromes and, despite their abundance and key functional roles, to date there is no structural information for these proteins in solution. The trihaem cytochrome PpcA might have a crucial role in the conversion of electronic energy into protonmotive force, a fundamental step for ATP synthesis in the presence of extracellular electron acceptors. In the present study, 15N-labelled PpcA was produced and NMR spectroscopy was used to determine its solution structure in the fully reduced state, its backbone dynamics and the pH-dependent conformational changes. The structure obtained is well defined, with an average pairwise rmsd (root mean square deviation) of 0.25 Å (1 Å=0.1 nm) for the backbone atoms and 0.99 Å for all heavy atoms, and constitutes the first solution structure of a Gs cytochrome. The redox-Bohr centre responsible for controlling the electron/proton transfer was identified, as well as the putative interacting regions between PpcA and its redox partners. The solution structure of PpcA will constitute the foundation for studies aimed at mapping out in detail these interacting regions.

摘要

Gs(脱硫肠状菌)可以将电子转移到细胞外部,这种特性使其成为生物技术应用开发的首选候选者。其基因组编码了超过 100 种细胞色素,尽管它们数量丰富且具有关键的功能作用,但迄今为止,这些蛋白质在溶液中的结构信息仍不明确。三血红素细胞色素 PpcA 可能在将电子能量转化为质子动力方面发挥着关键作用,这是在外源电子受体存在的情况下合成 ATP 的基本步骤。在本研究中,我们生产了 15N 标记的 PpcA,并利用 NMR 光谱确定了其在完全还原状态下的溶液结构、骨架动力学以及 pH 依赖性构象变化。获得的结构定义明确,其骨架原子的平均两两 rmsd(均方根偏差)为 0.25Å(1Å=0.1nm),所有重原子的 rmsd 为 0.99Å,这是 Gs 细胞色素的首个溶液结构。确定了负责控制电子/质子转移的氧化还原 Bohr 中心,以及 PpcA 与其氧化还原伴侣之间的假定相互作用区域。PpcA 的溶液结构将成为详细绘制这些相互作用区域的研究基础。

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