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计算生物钟温度补偿中的激活能。

Calculating activation energies for temperature compensation in circadian rhythms.

机构信息

Department of Bioinformatics, Friedrich Schiller University Jena, Ernst-Abbe-Platz 2, D-07743 Jena, Germany.

出版信息

Phys Biol. 2011 Oct;8(5):056007. doi: 10.1088/1478-3975/8/5/056007. Epub 2011 Sep 2.

Abstract

Many biological species possess a circadian clock, which helps them anticipate daily variations in the environment. In the absence of external stimuli, the rhythm persists autonomously with a period of approximately 24 h. However, single pulses of light, nutrients, chemicals or temperature can shift the clock phase. In the case of light- and temperature-cycles, this allows entrainment of the clock to cycles of exactly 24 h. Circadian clocks have the remarkable property of temperature compensation, that is, the period of the circadian rhythm remains relatively constant within a physiological range of temperatures. For several organisms, temperature-regulated processes within the circadian clock have been identified in recent years. However, how these processes contribute to temperature compensation is not fully understood. Here, we theoretically investigate temperature compensation in general oscillatory systems. It is known that every oscillator can be locally temperature compensated around a reference temperature, if reactions are appropriately balanced. A balancing is always possible if the control coefficient with respect to the oscillation period of at least one reaction in the oscillator network is positive. However, for global temperature compensation, the whole physiological temperature range is relevant. Here, we use an approach which leads to an optimization problem subject to the local balancing principle. We use this approach to analyse different circadian clock models proposed in the literature and calculate activation energies that lead to temperature compensation.

摘要

许多生物物种都拥有生物钟,这有助于它们预测环境中的日常变化。在没有外部刺激的情况下,生物钟会自主地以大约 24 小时的周期持续运转。然而,光、营养物质、化学物质或温度的单次脉冲可以改变生物钟的相位。在光和温度周期的情况下,这允许生物钟与正好 24 小时的周期同步。生物钟具有温度补偿的显著特性,即生物钟的周期在生理温度范围内保持相对稳定。近年来,已经在几种生物体中发现了生物钟内的温度调节过程。然而,这些过程如何促成温度补偿还不完全清楚。在这里,我们从理论上研究了一般振荡系统中的温度补偿。众所周知,如果反应得到适当的平衡,每个振荡器都可以在参考温度附近进行局部温度补偿。如果振荡器网络中至少一个反应的控制系数对振荡周期的影响是正的,则总是可以实现平衡。然而,对于全局温度补偿,整个生理温度范围都是相关的。在这里,我们使用一种方法,该方法导致受局部平衡原理约束的优化问题。我们使用这种方法来分析文献中提出的不同生物钟模型,并计算出导致温度补偿的激活能。

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