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Polaromonas 菌型的全球分布——具有高度成功扩散能力的证据。

Global distribution of Polaromonas phylotypes--evidence for a highly successful dispersal capacity.

机构信息

Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, Colorado, United States of America.

出版信息

PLoS One. 2011;6(8):e23742. doi: 10.1371/journal.pone.0023742. Epub 2011 Aug 29.

Abstract

Bacteria from the genus Polaromonas are dominant phylotypes in clone libraries and culture collections from polar and high-elevation environments. Although Polaromonas has been found on six continents, we do not know if the same phylotypes exist in all locations or if they exhibit genetic isolation by distance patterns. To examine their biogeographic distribution, we analyzed all available, long-read 16S rRNA gene sequences of Polaromonas phylotypes from glacial and periglacial environments across the globe. Using genetic isolation by geographic distance analyses, including Mantel tests and Mantel correlograms, we found that Polaromonas phylotypes are globally distributed showing weak isolation by distance patterns at global scales. More focused analyses using discrete, equally sampled distances classes, revealed that only two distance classes (out of 12 total) showed significant spatial structuring. Overall, our analyses show that most Polaromonas phylotypes are truly globally distributed, but that some, as yet unknown, environmental variable may be selecting for unique phylotypes at a minority of our global sites. Analyses of aerobiological and genomic data suggest that Polaromonas phylotypes are globally distributed as dormant cells through high-elevation air currents; Polaromonas phylotypes are common in air and snow samples from high altitudes, and a glacial-ice metagenome and the two sequenced Polaromonas genomes contain the gene hipA, suggesting that Polaromonas can form dormant cells.

摘要

从极地和高海拔环境的克隆文库和培养物集中,主要的类群是极地单胞菌属(Polaromonas)的细菌。尽管已经在六大洲发现了极地单胞菌,但我们不知道所有地点是否存在相同的类群,或者它们是否存在由距离引起的遗传隔离模式。为了研究它们的生物地理分布,我们分析了全球冰川和冻原环境中极地单胞菌属的所有可用的长读 16S rRNA 基因序列。通过包括 Mantel 检验和 Mantel 相关图在内的地理距离遗传隔离分析,我们发现极地单胞菌属的类群在全球范围内分布,在全球范围内表现出微弱的距离隔离模式。通过使用离散的、等距样本距离类别的更集中的分析,发现只有两个距离类(总共 12 个)显示出显著的空间结构。总体而言,我们的分析表明,大多数极地单胞菌属的类群确实是全球性分布的,但仍有一些未知的环境变量可能会在我们的全球少数站点中选择独特的类群。空气生物学和基因组数据分析表明,极地单胞菌属的类群通过高海拔气流以休眠细胞的形式在全球范围内分布;极地单胞菌属的类群在高海拔地区的空气和雪中很常见,而冰川冰宏基因组和两个测序的极地单胞菌属基因组都包含了 hipA 基因,这表明极地单胞菌属可以形成休眠细胞。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9f59/3163589/0075d61dc21c/pone.0023742.g001.jpg

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