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利用基因组选择加速树木驯化:预测模型在不同年龄和环境下的准确性。

Accelerating the domestication of trees using genomic selection: accuracy of prediction models across ages and environments.

机构信息

Genetics and Genomics Graduate Program, University of Florida, PO Box 103610, Gainesville, FL 32611, USA.

School of Forest Resources and Conservation, University of Florida, PO Box 110410, Gainesville, FL 32611, USA.

出版信息

New Phytol. 2012 Feb;193(3):617-624. doi: 10.1111/j.1469-8137.2011.03895.x. Epub 2011 Oct 5.

DOI:10.1111/j.1469-8137.2011.03895.x
PMID:21973055
Abstract

• Genomic selection is increasingly considered vital to accelerate genetic improvement. However, it is unknown how accurate genomic selection prediction models remain when used across environments and ages. This knowledge is critical for breeders to apply this strategy in genetic improvement. • Here, we evaluated the utility of genomic selection in a Pinus taeda population of c. 800 individuals clonally replicated and grown on four sites, and genotyped for 4825 single-nucleotide polymorphism (SNP) markers. Prediction models were estimated for diameter and height at multiple ages using genomic random regression best linear unbiased predictor (BLUP). • Accuracies of prediction models ranged from 0.65 to 0.75 for diameter, and 0.63 to 0.74 for height. The selection efficiency per unit time was estimated as 53-112% higher using genomic selection compared with phenotypic selection, assuming a reduction of 50% in the breeding cycle. Accuracies remained high across environments as long as they were used within the same breeding zone. However, models generated at early ages did not perform well to predict phenotypes at age 6 yr. • These results demonstrate the feasibility and remarkable gain that can be achieved by incorporating genomic selection in breeding programs, as long as models are used at the relevant selection age and within the breeding zone in which they were estimated.

摘要

• 基因组选择越来越被认为对加速遗传改良至关重要。然而,当在不同环境和年龄段使用时,基因组选择预测模型的准确性仍然未知。这对于育种家将该策略应用于遗传改良至关重要。

• 在这里,我们评估了基因组选择在大约 800 个个体的克隆复制和在四个地点生长的 Pinus taeda 群体中的效用,并对 4825 个单核苷酸多态性 (SNP) 标记进行了基因型分析。使用基因组随机回归最佳线性无偏预测 (BLUP) 为多个年龄段的直径和高度估计了预测模型。

• 直径的预测模型准确性范围为 0.65 至 0.75,高度的预测模型准确性范围为 0.63 至 0.74。与表型选择相比,假设繁殖周期减少 50%,使用基因组选择每单位时间的选择效率提高了 53-112%。只要在同一繁殖区内使用,环境间的准确性仍然很高。然而,在早期生成的模型在预测 6 岁时的表型方面表现不佳。

• 这些结果表明,只要在相关的选择年龄和估计模型的繁殖区内使用,将基因组选择纳入育种计划是可行的,并且可以获得显著的增益。

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