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土壤中分离得到的耐热放线菌 Actinokineospora soli sp. nov.,并对 Actinokineospora 属的描述进行了修正。

Actinokineospora soli sp. nov., a thermotolerant actinomycete isolated from soil, and emended description of the genus Actinokineospora.

机构信息

Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education and Laboratory for Conservation and Utilization of Bio-Resources, Yunnan Institute of Microbiology, Yunnan University, Kunming 650091, PR China.

Institute of Quality and Standard for Agro-products, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, PR China.

出版信息

Int J Syst Evol Microbiol. 2012 Aug;62(Pt 8):1845-1849. doi: 10.1099/ijs.0.035832-0. Epub 2011 Oct 7.

Abstract

A strain of thermotolerant actinomycete, designated YIM 75948(T), was isolated from a soil sample in Yunnan province, China. The strain grew at 25-55 °C (optimum 37 °C). The substrate mycelium and aerial mycelium produced on Czapek's agar were both pale yellow to white. The diagnostic diamino acid of the cell-wall peptidoglycan was meso-diaminopimelic acid, and the whole-cell sugars were mannose, ribose, glucose, galactose and arabinose. The major fatty acids were iso-C(15:0), iso-C(16:0) and C(16:0) and the predominant respiratory quinone was MK-9(H(4))(.) The polar lipids consisted of phosphatidylethanolamine, phosphatidylethanolamine with hydroxy fatty acids, diphosphatidylglycerol, phosphatidylinositol and two unidentified phospholipids. The genomic DNA G+C content was 73.8 mol%. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain YIM 75948(T) belonged in the genus Actinokineospora and that its closest relative among recognized species was Actinokineospora fastidiosa DSM 43855(T) (97.6% sequence similarity). The mean level of DNA-DNA relatedness between the novel strain and A. fastidiosa DSM 43855(T) was, however, only 47.8%. Based on the phenotypic, chemotaxonomic and phylogenetic data and the results of the DNA-DNA hybridizations, strain YIM 75948(T) represents a novel species of the genus Actinokineospora for which the name Actinokineospora soli sp. nov. is proposed. The type strain is YIM 75948(T) ( =JCM 17695(T) =DSM 45613(T)). The description of the genus Actinokineospora is emended to reflect the fact that the genomic DNA G+C contents of A. fastidiosa DSM 43855(T) and the type strain of Actinokineospora soli sp. nov. recorded in the present study fell above the range given in previous descriptions of this genus.

摘要

一株嗜热放线菌,命名为 YIM 75948(T),从中国云南省的土壤样本中分离得到。该菌株在 25-55°C(最佳 37°C)下生长。在察氏琼脂上产生的基质菌丝和气生菌丝均为浅黄色至白色。细胞壁肽聚糖的诊断二氨基氨基酸为内消旋二氨基庚二酸,全细胞糖为甘露糖、核糖、葡萄糖、半乳糖和阿拉伯糖。主要脂肪酸为 iso-C(15:0)、iso-C(16:0)和 C(16:0),主要呼吸醌为 MK-9(H(4))(。极性脂由磷脂酰乙醇胺、含羟基脂肪酸的磷脂酰乙醇胺、双磷脂酰甘油、磷脂酰肌醇和两种未鉴定的磷脂组成。基因组 DNA G+C 含量为 73.8mol%。基于 16S rRNA 基因序列的系统发育分析表明,菌株 YIM 75948(T)属于 Actinokineospora 属,与公认种中最接近的种是 Actinokineospora fastidiosa DSM 43855(T)(97.6%序列相似性)。然而,新型菌株与 A. fastidiosa DSM 43855(T)之间的平均 DNA-DNA 同源性水平仅为 47.8%。基于表型、化学分类和系统发育数据以及 DNA-DNA 杂交的结果,菌株 YIM 75948(T)代表 Actinokineospora 属的一个新种,建议将其命名为 Actinokineospora soli sp. nov.。模式菌株为 YIM 75948(T)(=JCM 17695(T)=DSM 45613(T))。对 Actinokineospora 属的描述进行了修订,以反映 A. fastidiosa DSM 43855(T)和本研究中记录的 Actinokineospora soli sp. nov. 模式菌株的基因组 DNA G+C 含量均高于该属先前描述的范围这一事实。

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