Department of Plant Biology, 178 Wilson Lane, Michigan State University, East Lansing, MI 48824, USA.
Database (Oxford). 2011 Nov 26;2011:bar053. doi: 10.1093/database/bar053. Print 2011.
The Comprehensive Phytopathogen Genomics Resource (CPGR) provides a web-based portal for plant pathologists and diagnosticians to view the genome and trancriptome sequence status of 806 bacterial, fungal, oomycete, nematode, viral and viroid plant pathogens. Tools are available to search and analyze annotated genome sequences of 74 bacterial, fungal and oomycete pathogens. Oomycete and fungal genomes are obtained directly from GenBank, whereas bacterial genome sequences are downloaded from the A Systematic Annotation Package (ASAP) database that provides curation of genomes using comparative approaches. Curated lists of bacterial genes relevant to pathogenicity and avirulence are also provided. The Plant Pathogen Transcript Assemblies Database provides annotated assemblies of the transcribed regions of 82 eukaryotic genomes from publicly available single pass Expressed Sequence Tags. Data-mining tools are provided along with tools to create candidate diagnostic markers, an emerging use for genomic sequence data in plant pathology. The Plant Pathogen Ribosomal DNA (rDNA) database is a resource for pathogens that lack genome or transcriptome data sets and contains 131 755 rDNA sequences from GenBank for 17 613 species identified as plant pathogens and related genera. Database URL: http://cpgr.plantbiology.msu.edu.
综合性植物病原物基因组资源（CPGR）为植物病理学家和诊断学家提供了一个基于网络的门户，可用于查看 806 种细菌、真菌、卵菌、线虫、病毒和类病毒植物病原物的基因组和转录组序列状态。该工具可用于搜索和分析 74 种细菌、真菌和卵菌病原体的注释基因组序列。卵菌和真菌基因组直接从 GenBank 获得，而细菌基因组序列则从系统分类学注释包（ASAP）数据库下载，该数据库使用比较方法对基因组进行了整理。还提供了与致病性和无毒相关的细菌基因的精选列表。植物病原物转录物组装数据库提供了 82 种真核基因组转录区域的注释组装，这些基因组来自公开的单步表达序列标签。提供了数据挖掘工具以及创建候选诊断标记的工具，这是基因组序列数据在植物病理学中的新兴用途。核糖体 DNA（rDNA）数据库是缺乏基因组或转录组数据集的病原体的资源，其中包含来自 GenBank 的 17613 种植物病原物和相关属的 131755 个 rDNA 序列。数据库网址：http://cpgr.plantbiology.msu.edu。
