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分枝杆菌属菌株(Spyr1)的全基因组序列及重新分类为吉尔万分枝杆菌Spyr1

Complete genome sequence of Mycobacterium sp. strain (Spyr1) and reclassification to Mycobacterium gilvum Spyr1.

作者信息

Kallimanis Aristeidis, Karabika Eugenia, Mavromatis Kostantinos, Lapidus Alla, Labutti Kurt M, Liolios Konstantinos, Ivanova Natalia, Goodwin Lynne, Woyke Tanja, Velentzas Athanasios D, Perisynakis Angelos, Ouzounis Christos C, Kyrpides Nikos C, Koukkou Anna I, Drainas Constantin

出版信息

Stand Genomic Sci. 2011 Oct 15;5(1):144-53. doi: 10.4056/sigs.2265047. Epub 2011 Oct 1.

DOI:10.4056/sigs.2265047
PMID:22180818
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3236039/
Abstract

Mycobacterium sp.Spyr1 is a newly isolated strain that occurs in a creosote contaminated site in Greece. It was isolated by an enrichment method using pyrene as sole carbon and energy source and is capable of degrading a wide range of PAH substrates including pyrene, fluoranthene, fluorene, anthracene and acenapthene. Here we describe the genomic features of this organism, together with the complete sequence and annotation. The genome consists of a 5,547,747 bp chromosome and two plasmids, a larger and a smaller one with sizes of 211,864 and 23,681 bp, respectively. In total, 5,588 genes were predicted and annotated.

摘要

分枝杆菌属Spyr1菌株是从希腊一个被杂酚油污染的地点新分离出的菌株。它是通过以芘作为唯一碳源和能源的富集方法分离得到的,能够降解多种多环芳烃底物,包括芘、荧蒽、芴、蒽和苊烯。在此,我们描述了该生物体的基因组特征以及完整序列和注释。基因组由一条5,547,747 bp的染色体和两个质粒组成,一个较大,一个较小,大小分别为211,864 bp和23,681 bp。总共预测并注释了5,588个基因。

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