D. E. Shaw Research, New York, NY 10036, USA.
J Comput Aided Mol Des. 2012 Jan;26(1):15-26. doi: 10.1007/s10822-011-9517-y. Epub 2011 Dec 20.
Molecular dynamics simulations can now track rapid processes--those occurring in less than about a millisecond--at atomic resolution for many biologically relevant systems. These simulations appear poised to exert a significant impact on how new drugs are found, perhaps even transforming the very process of drug discovery. We predict here future results we can expect from, and enhancements we need to make in, molecular dynamics simulations over the coming 25 years, and in so doing set out several Grand Challenges for the field. In the context of the problems now facing the pharmaceutical industry, we ask how we can best address drug discovery needs of the next quarter century using molecular dynamics simulations, and we suggest some possible approaches.
分子动力学模拟现在可以在原子分辨率下追踪许多与生物学相关的系统中发生的快速过程——那些在大约一毫秒内发生的过程。这些模拟似乎准备对新药的发现产生重大影响,甚至可能改变药物发现的过程。在这里,我们预测了在未来 25 年内,分子动力学模拟可以产生的未来结果,以及我们需要在哪些方面进行改进,并为该领域设定了几个重大挑战。在当前制药行业面临的问题的背景下,我们询问如何最好地使用分子动力学模拟来满足未来四分之一个世纪的药物发现需求,并提出了一些可能的方法。