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基于 TALE 的转录调控因子和核酸酶的快速高效构建及其在基因组修饰中的应用。

Rapid and highly efficient construction of TALE-based transcriptional regulators and nucleases for genome modification.

机构信息

Division of Chemical and Life Sciences and Engineering, King Abdullah University of Science and Technology, Thuwal 23955-6900, Kingdom of Saudi Arabia.

出版信息

Plant Mol Biol. 2012 Mar;78(4-5):407-16. doi: 10.1007/s11103-012-9875-4. Epub 2012 Jan 22.

Abstract

Transcription activator-like effectors (TALEs) can be used as DNA-targeting modules by engineering their repeat domains to dictate user-selected sequence specificity. TALEs have been shown to function as site-specific transcriptional activators in a variety of cell types and organisms. TALE nucleases (TALENs), generated by fusing the FokI cleavage domain to TALE, have been used to create genomic double-strand breaks. The identity of the TALE repeat variable di-residues, their number, and their order dictate the DNA sequence specificity. Because TALE repeats are nearly identical, their assembly by cloning or even by synthesis is challenging and time consuming. Here, we report the development and use of a rapid and straightforward approach for the construction of designer TALE (dTALE) activators and nucleases with user-selected DNA target specificity. Using our plasmid set of 100 repeat modules, researchers can assemble repeat domains for any 14-nucleotide target sequence in one sequential restriction-ligation cloning step and in only 24 h. We generated several custom dTALEs and dTALENs with new target sequence specificities and validated their function by transient expression in tobacco leaves and in vitro DNA cleavage assays, respectively. Moreover, we developed a web tool, called idTALE, to facilitate the design of dTALENs and the identification of their genomic targets and potential off-targets in the genomes of several model species. Our dTALE repeat assembly approach along with the web tool idTALE will expedite genome-engineering applications in a variety of cell types and organisms including plants.

摘要

转录激活子样效应因子(TALEs)可以通过工程化其重复结构域来指定用户选择的序列特异性,从而用作 DNA 靶向模块。已经证明 TALEs 在多种细胞类型和生物体中作为特异性转录激活因子发挥作用。TALE 核酸酶(TALENs)通过将 FokI 切割结构域融合到 TALE 中产生,已被用于创建基因组双链断裂。TALE 重复可变双残基的身份、数量和顺序决定了 DNA 序列特异性。由于 TALE 重复序列几乎相同,因此通过克隆甚至合成进行组装具有挑战性且耗时。在这里,我们报告了一种快速而直接的方法的开发和使用,用于构建具有用户选择的 DNA 靶特异性的设计 TALE(dTALE)激活子和核酸酶。使用我们的 100 个重复模块质粒组,研究人员可以在一个连续的限制酶切-连接克隆步骤中仅在 24 小时内组装任何 14 个核苷酸靶序列的重复结构域。我们生成了几个具有新靶序列特异性的定制 dTALEs 和 dTALENs,并通过瞬时表达在烟草叶片中和体外 DNA 切割测定分别验证了它们的功能。此外,我们开发了一个名为 idTALE 的网络工具,以促进 dTALEN 的设计以及它们在几种模式物种基因组中的基因组靶标和潜在脱靶的鉴定。我们的 dTALE 重复组装方法以及网络工具 idTALE 将加快各种细胞类型和生物体(包括植物)中的基因组工程应用。

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