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非洲爪蟾白皮书及资源:将功能基因组学与遗传学融入爪蟾研究

Xenopus white papers and resources: folding functional genomics and genetics into the frog.

作者信息

Khokha Mustafa K

机构信息

Department of Pediatrics and Genetics, Yale University School of Medicine, New Haven, CT 06520, USA.

出版信息

Genesis. 2012 Mar;50(3):133-42. doi: 10.1002/dvg.22015. Epub 2012 Feb 20.

DOI:10.1002/dvg.22015
PMID:22287484
Abstract

The frog Xenopus has been vital for biomedical science for over 80 years, contributing to diverse fields from cell signaling, cell and developmental biology, to ion channel physiology and toxicology. Its experimentally manipulable oocytes and embryos provide abundant material for molecular and biochemical approaches for a wide range of gene discovery and protein function studies. In recent years, the Xenopus community has invested in key resources for functional genomics, including genome-wide full-length cDNA collections and genome assemblies as well as genetic tools. These assets combine with Xenopus' extensive range of functional assays to create exciting new research avenues with medical as well as basic applications. This review describes how these resources were developed and what new tools are on the horizon.

摘要

80多年来,非洲爪蟾在生物医学科学领域一直至关重要,为从细胞信号传导、细胞与发育生物学,到离子通道生理学和毒理学等多个领域做出了贡献。其可进行实验操作的卵母细胞和胚胎为广泛的基因发现和蛋白质功能研究的分子与生化方法提供了丰富的材料。近年来,非洲爪蟾研究群体投入了功能基因组学的关键资源,包括全基因组全长cDNA文库、基因组组装以及遗传工具。这些资源与非洲爪蟾广泛的功能检测方法相结合,开创了令人兴奋的新研究途径,具有医学和基础应用价值。本综述描述了这些资源是如何开发的以及即将出现的新工具。

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1
Xenopus white papers and resources: folding functional genomics and genetics into the frog.非洲爪蟾白皮书及资源:将功能基因组学与遗传学融入爪蟾研究
Genesis. 2012 Mar;50(3):133-42. doi: 10.1002/dvg.22015. Epub 2012 Feb 20.
2
Resources and transgenesis techniques for functional genomics in Xenopus.非洲爪蟾功能基因组学的资源与转基因技术
Dev Growth Differ. 2009 May;51(4):387-401. doi: 10.1111/j.1440-169X.2009.01098.x.
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Xenomics.异种基因组学
Genome Res. 2005 Dec;15(12):1683-91. doi: 10.1101/gr.3801805.
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Xenopus genomic data and browser resources.非洲爪蟾基因组数据及浏览器资源。
Dev Biol. 2017 Jun 15;426(2):194-199. doi: 10.1016/j.ydbio.2016.03.030. Epub 2016 Mar 31.
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Advancing genetic and genomic technologies deepen the pool for discovery in Xenopus tropicalis.推进遗传和基因组技术加深了在爪蟾中的发现池。
Dev Dyn. 2019 Aug;248(8):620-625. doi: 10.1002/dvdy.80. Epub 2019 Jul 9.
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Using Xenopus to understand human disease and developmental disorders.利用非洲爪蟾来了解人类疾病和发育障碍。
Genesis. 2017 Jan;55(1-2). doi: 10.1002/dvg.22997.
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The Xenopus ORFeome: A resource that enables functional genomics.非洲爪蟾开放阅读框文库:一个助力功能基因组学研究的资源。
Dev Biol. 2015 Dec 15;408(2):345-57. doi: 10.1016/j.ydbio.2015.09.004. Epub 2015 Sep 29.
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Insights from Xenopus genomes.非洲爪蟾基因组的见解。
Genome Dyn. 2006;2:138-153. doi: 10.1159/000095101.
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Development of Xenopus resource centers: the National Xenopus Resource and the European Xenopus Resource Center.非洲爪蟾资源中心的发展:美国国家非洲爪蟾资源中心和欧洲非洲爪蟾资源中心。
Genesis. 2012 Mar;50(3):155-63. doi: 10.1002/dvg.22013. Epub 2012 Feb 16.
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Xenbase: a Xenopus biology and genomics resource.非洲爪蟾数据库:一个非洲爪蟾生物学与基因组学资源库。
Nucleic Acids Res. 2008 Jan;36(Database issue):D761-7. doi: 10.1093/nar/gkm826. Epub 2007 Nov 4.

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