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评估物种界定的多个标准:以夏威夷掌类植物(棕榈科:蒲葵属)为例的实证研究。

Evaluating multiple criteria for species delimitation: an empirical example using Hawaiian palms (Arecaceae: Pritchardia).

机构信息

Department of Biology, Colorado State University, Fort Collins, CO 80523-1878, USA.

出版信息

BMC Evol Biol. 2012 Feb 22;12:23. doi: 10.1186/1471-2148-12-23.

DOI:10.1186/1471-2148-12-23
PMID:22353848
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3356231/
Abstract

BACKGROUND

Robust species delimitations are fundamental for conservation, evolutionary, and systematic studies, but they can be difficult to estimate, particularly in rapid and recent radiations. The consensus that species concepts aim to identify evolutionarily distinct lineages is clear, but the criteria used to distinguish evolutionary lineages differ based on the perceived importance of the various characteristics of evolving populations. We examined three different species-delimitation criteria (monophyly, absence of genetic intermediates, and diagnosability) to determine whether currently recognized species of Hawaiian Pritchardia are distinct lineages.

RESULTS

Data from plastid and nuclear genes, microsatellite loci, and morphological characters resulted in various levels of lineage subdivision that were likely caused by differing evolutionary rates between data sources. Additionally, taxonomic entities may be confounded because of the effects of incomplete lineage sorting and/or gene flow. A coalescent species tree was largely congruent with the simultaneous analysis, consistent with the idea that incomplete lineage sorting did not mislead our results. Furthermore, gene flow among populations of sympatric lineages likely explains the admixture and lack of resolution between those groups.

CONCLUSIONS

Delimiting Hawaiian Pritchardia species remains difficult but the ability to understand the influence of the evolutionary processes of incomplete lineage sorting and hybridization allow for mechanisms driving species diversity to be inferred. These processes likely extend to speciation in other Hawaiian angiosperm groups and the biota in general and must be explicitly accounted for in species delimitation.

摘要

背景

稳健的物种界定对于保护、进化和系统学研究至关重要,但在快速和近期的辐射中,这可能很难估计。物种概念旨在识别进化上不同的谱系,这一点已经达成共识,但用于区分进化谱系的标准因对不断进化的种群各种特征的重视程度而异。我们检查了三种不同的物种界定标准(单系性、无遗传中间型和可诊断性),以确定夏威夷普里查德氏兰花目前公认的物种是否为不同的谱系。

结果

来自质体和核基因、微卫星位点和形态特征的数据导致了不同程度的谱系细分,这可能是由于不同数据源之间的进化速率不同造成的。此外,分类实体可能因不完全谱系分选和/或基因流的影响而混淆。一个合并的物种树与同时进行的分析基本一致,这与不完全谱系分选没有误导我们的结果的观点一致。此外,同域谱系种群之间的基因流可能解释了这些群体之间的混合和缺乏分辨率。

结论

夏威夷普里查德氏兰花的物种界定仍然困难,但理解不完全谱系分选和杂交等进化过程的影响,可以推断出驱动物种多样性的机制。这些过程可能扩展到其他夏威夷被子植物群和生物区系的物种形成,并且必须在物种界定中明确考虑。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c3f8/3356231/394ee8623e78/1471-2148-12-23-5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c3f8/3356231/b7017b8c604a/1471-2148-12-23-1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c3f8/3356231/023e24982429/1471-2148-12-23-2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c3f8/3356231/eef17f74d9a9/1471-2148-12-23-3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c3f8/3356231/c19a90605fd2/1471-2148-12-23-4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c3f8/3356231/394ee8623e78/1471-2148-12-23-5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c3f8/3356231/b7017b8c604a/1471-2148-12-23-1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c3f8/3356231/023e24982429/1471-2148-12-23-2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c3f8/3356231/eef17f74d9a9/1471-2148-12-23-3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c3f8/3356231/c19a90605fd2/1471-2148-12-23-4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c3f8/3356231/394ee8623e78/1471-2148-12-23-5.jpg

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本文引用的文献

1
PHYLOGENETIC SYSTEMATICS AND THE SPECIES PROBLEM.系统发育系统学与物种问题
Cladistics. 1988 Dec;4(4):317-338. doi: 10.1111/j.1096-0031.1988.tb00518.x.
2
POLYMORPHIC TAXA, MISSING VALUES AND CLADISTIC ANALYSIS.多态分类单元、缺失值与分支分析
Cladistics. 1991 Sep;7(3):233-241. doi: 10.1111/j.1096-0031.1991.tb00036.x.
3
ON SIMULTANEOUS ANALYSIS.关于同步分析
分子和形态分析阐明了 Costatae 组内的物种界限,并在中国揭示了新种 Betula buggsii sp. nov.(Betulaceae 科 Costatae 组)。
Ann Bot. 2022 Mar 23;129(4):415-428. doi: 10.1093/aob/mcac001.
4
Plant Taxonomy: A Historical Perspective, Current Challenges, and Perspectives.植物分类学:历史视角、当前挑战与展望
Methods Mol Biol. 2021;2222:1-38. doi: 10.1007/978-1-0716-0997-2_1.
5
Targeted Capture of Hundreds of Nuclear Genes Unravels Phylogenetic Relationships of the Diverse Neotropical Palm Tribe Geonomateae.数百个核基因的靶向捕获揭示了新热带棕榈族Geonomateae不同属种间的系统发育关系。
Front Plant Sci. 2019 Jul 12;10:864. doi: 10.3389/fpls.2019.00864. eCollection 2019.
6
Embracing heterogeneity: coalescing the Tree of Life and the future of phylogenomics.拥抱异质性:融合生命之树与系统发育基因组学的未来。
PeerJ. 2019 Feb 14;7:e6399. doi: 10.7717/peerj.6399. eCollection 2019.
7
Deeply divergent sympatric mitochondrial lineages of the earthworm Lumbricus rubellus are not reproductively isolated.赤子爱胜蚓(Lumbricus rubellus)深度分化的同域线粒体谱系并未发生生殖隔离。
BMC Evol Biol. 2015 Oct 5;15:217. doi: 10.1186/s12862-015-0488-9.
8
Assessing species boundaries using multilocus species delimitation in a morphologically conserved group of neotropical freshwater fishes, the Poecilia sphenops species complex (Poeciliidae).利用多位点物种界定法评估新热带淡水鱼形态保守类群——食蚊鱼物种复合体(花鳉科)的物种界限。
PLoS One. 2015 Apr 7;10(4):e0121139. doi: 10.1371/journal.pone.0121139. eCollection 2015.
9
Delimiting cryptic pathogen species causing apple Valsa canker with multilocus data.利用多位点数据对引起苹果树腐烂病的隐存病原种进行划分。
Ecol Evol. 2014 Apr;4(8):1369-80. doi: 10.1002/ece3.1030. Epub 2014 Mar 19.
10
True lemurs…true species - species delimitation using multiple data sources in the brown lemur complex.真正的狐猴……真正的物种——使用多种数据源对褐狐猴复合体进行物种界定。
BMC Evol Biol. 2013 Oct 26;13:233. doi: 10.1186/1471-2148-13-233.
Cladistics. 1996 Sep;12(3):221-241. doi: 10.1111/j.1096-0031.1996.tb00010.x.
4
PARSIMONY JACKKNIFING OUTPERFORMS NEIGHBOR-JOINING.简约自展法优于邻接法。
Cladistics. 1996 Jun;12(2):99-124. doi: 10.1111/j.1096-0031.1996.tb00196.x.
5
The conflation of ignorance and knowledge in the inference of clade posteriors.进化枝后验推断中无知与知识的 conflation(该词可能有误,推测为“融合”之意,此处按推测翻译) 。
Cladistics. 2010 Oct;26(5):550-559. doi: 10.1111/j.1096-0031.2009.00301.x.
6
HYBRIDS AND PHYLOGENETIC SYSTEMATICS II. THE IMPACT OF HYBRIDS ON CLADISTIC ANALYSIS.杂交种与系统发育系统学II. 杂交种对分支系统分析的影响。
Evolution. 1992 Oct;46(5):1329-1346. doi: 10.1111/j.1558-5646.1992.tb01127.x.
7
CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP.系统发育树的置信区间:一种使用自展法的方法。
Evolution. 1985 Jul;39(4):783-791. doi: 10.1111/j.1558-5646.1985.tb00420.x.
8
Miocene dispersal drives island radiations in the palm tribe Trachycarpeae (Arecaceae).中新世扩散驱动棕榈科鱼尾葵族的岛屿辐射。
Syst Biol. 2012 May;61(3):426-42. doi: 10.1093/sysbio/syr123. Epub 2012 Jan 5.
9
Development of microsatellites in the Hawaiian endemic palm Pritchardia martii (Arecaceae) and their utility in congeners.夏威夷特有掌状叶蒲葵属植物(棕榈科)微卫星的开发及其在同属植物中的应用。
Am J Bot. 2011 Jun;98(6):e139-40. doi: 10.3732/ajb.1100073. Epub 2011 May 27.
10
Phylogeny and biogeography of the sandalwoods (Santalum, Santalaceae): repeated dispersals throughout the Pacific.檀香属(檀香科)的系统发育和生物地理学:在整个太平洋的重复扩散。
Am J Bot. 2007 Jun;94(6):1028-40. doi: 10.3732/ajb.94.6.1028.