Washio Takumi, Okada Jun-Ichi, Sugiura Seiryo, Hisada Toshiaki
Cell Mol Bioeng. 2012 Mar;5(1):113-126. doi: 10.1007/s12195-011-0219-2. Epub 2011 Dec 28.
We developed a novel ordinary differential equation (ODE) model, which produced results that correlated well with the Monte Carlo (MC) simulation when applied to a spatially-detailed model of the cardiac sarcomere. Configuration of the novel ODE model was based on the Ising model of myofilaments, with the "co-operative activation" effect introduced to incorporate nearest-neighbor interactions. First, a set of parameters was estimated using arbitrary Ca transient data to reproduce the combinational probability for the states of three consecutive regulatory units, using single unit probabilities for central and neighboring units in the MC simulation. The parameter set thus obtained enabled the calculation of the state transition of each unit using the ODE model with reference to the neighboring states. The present ODE model not only provided good agreement with the MC simulation results but was also capable of reproducing a wide range of experimental results under both steady-state and dynamic conditions including shortening twitch. The simulation results suggested that the nearest-neighbor interaction is a reasonable approximation of the cooperativity based on end-to-end interactions. Utilizing the modified ODE model resulted in a reduction in computational costs but maintained spatial integrity and co-operative effects, making it a powerful tool in cardiac modeling.
我们开发了一种新型常微分方程(ODE)模型,当将其应用于心肌节段的空间详细模型时,该模型产生的结果与蒙特卡罗(MC)模拟结果具有良好的相关性。新型ODE模型的构建基于肌丝的伊辛模型,并引入了“协同激活”效应以纳入最近邻相互作用。首先,使用任意的钙瞬变数据估计一组参数,以重现三个连续调节单元状态的组合概率,在MC模拟中使用中央单元和相邻单元的单个单元概率。由此获得的参数集能够使用ODE模型参照相邻状态计算每个单元的状态转换。当前的ODE模型不仅与MC模拟结果高度吻合,而且还能够在包括缩短抽搐在内的稳态和动态条件下重现广泛的实验结果。模拟结果表明,最近邻相互作用是基于端到端相互作用的协同性的合理近似。使用改进后的ODE模型可降低计算成本,但保持空间完整性和协同效应,使其成为心脏建模的有力工具。