Division of Molecular Biosciences, Imperial College London, South Kensington SW7 2AZ, United Kingdom.
Proc Natl Acad Sci U S A. 2012 May 1;109(18):6951-6. doi: 10.1073/pnas.1118048109. Epub 2012 Apr 16.
Protein molecules have evolved to adopt distinctive and well-defined functional and soluble states under physiological conditions. In some circumstances, however, proteins can self-assemble into fibrillar aggregates designated as amyloid fibrils. In vivo these processes are normally associated with severe pathological conditions but can sometimes have functional relevance. One such example is the hydrophobins, whose aggregation at air-water interfaces serves to create robust protein coats that help fungal spores to resist wetting and thus facilitate their dispersal in the air. We have performed multiscale simulations to address the molecular determinants governing the formation of functional amyloids by the class I fungal hydrophobin EAS. Extensive samplings of full-atom replica-exchange molecular dynamics and coarse-grained simulations have allowed us to identify factors that distinguish aggregation-prone from highly soluble states of EAS. As a result of unfavourable entropic terms, highly dynamical regions are shown to exert a crucial influence on the propensity of the protein to aggregate under different conditions. More generally, our findings suggest a key role that specific flexible structural elements can play to ensure the existence of soluble and functional states of proteins under physiological conditions.
蛋白质分子在生理条件下已经进化为具有独特和明确的功能和可溶性状态。然而,在某些情况下,蛋白质可以自我组装成称为淀粉样纤维的纤维状聚集物。在体内,这些过程通常与严重的病理状况有关,但有时也具有功能相关性。其中一个例子是亲水性蛋白,其在气液界面的聚集有助于形成坚固的蛋白质外壳,帮助真菌孢子抵抗润湿,从而促进它们在空气中的传播。我们进行了多尺度模拟,以解决由 I 类真菌亲水性蛋白 EAS 形成功能性淀粉样蛋白的分子决定因素。全原子复制交换分子动力学和粗粒化模拟的广泛采样使我们能够确定区分易于聚集和高度可溶性状态的因素。由于不利的熵项,高动态区域被证明对蛋白质在不同条件下聚集的倾向具有至关重要的影响。更一般地说,我们的发现表明,特定的灵活结构元件可以在生理条件下确保蛋白质的可溶性和功能性状态的存在中发挥关键作用。