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真核生物中广泛存在的 GC 偏向性基因转换的证据。

Evidence for widespread GC-biased gene conversion in eukaryotes.

机构信息

Université Lyon 1, Centre National de la Recherche Scientifique, UMR5558, Laboratoire de Biométrie et Biologie évolutive, Villeurbanne, Cedex, France.

出版信息

Genome Biol Evol. 2012;4(7):675-82. doi: 10.1093/gbe/evs052. Epub 2012 May 23.

Abstract

GC-biased gene conversion (gBGC) is a process that tends to increase the GC content of recombining DNA over evolutionary time and is thought to explain the evolution of GC content in mammals and yeasts. Evidence for gBGC outside these two groups is growing but is still limited. Here, we analyzed 36 completely sequenced genomes representing four of the five major groups in eukaryotes (Unikonts, Excavates, Chromalveolates and Plantae). gBGC was investigated by directly comparing GC content and recombination rates in species where recombination data are available, that is, half of them. To study all species of our dataset, we used chromosome size as a proxy for recombination rate and compared it with GC content. Among the 17 species showing a significant relationship between GC content and chromosome size, 15 are consistent with the predictions of the gBGC model. Importantly, the species showing a pattern consistent with gBGC are found in all the four major groups of eukaryotes studied, which suggests that gBGC may be widespread in eukaryotes.

摘要

GC 偏向性基因转换(gBGC)是一种在进化过程中使重组 DNA 的 GC 含量增加的过程,被认为可以解释哺乳动物和酵母中 GC 含量的进化。除了这两组之外,gBGC 的证据正在不断增加,但仍然有限。在这里,我们分析了代表真核生物五个主要组中的四个(单鞭毛生物、挖洞生物、叶绿体生物和植物)的 36 个完全测序的基因组。通过直接比较具有重组数据的物种(即其中一半)中的 GC 含量和重组率来研究 gBGC。在 17 个显示 GC 含量和染色体大小之间存在显著关系的物种中,有 15 个与 gBGC 模型的预测一致。重要的是,与 gBGC 模式一致的物种存在于我们研究的所有四个真核生物主要组中,这表明 gBGC 可能在真核生物中广泛存在。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/03ae/5635611/eb72ee7b1619/evs052f1.jpg

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