Moore Jeffrey R, Li Xiaochuan, Nirody Jasmine, Fischer Stefan, Lehman William
Bioarchitecture. 2011 Sep 1;1(5):250-255. doi: 10.4161/bioa.18117.
Polar residues lying between adjacent α-helical chains of coiled-coils often contribute to coiled-coil curvature and flexibility, while more typical core hydrophobic residues anneal the chains together. In tropomyosins, ranging from smooth and skeletal muscle to cytoplasmic isoforms, a highly conserved Asp at residue 137 places negative charges within the tropomyosin coiled-coil core in a position which may affect the conformation needed for tropomyosin binding and regulatory movements on actin. Proteolytic susceptibility suggested that substituting a canonical Leu for the naturally occurring Asp at residue 137 increases inter-chain rigidity by stabilizing the tropomyosin coiled-coil. Using molecular dynamics, we now directly assess changes in coiled-coil curvature and flexibility caused by such mutants. Although the coiled-coil flexibility is modestly diminished near the residue 137 mutation site, as expected, a delocalized increase in flexibility along the overall coiled-coil is observed. Even though the average shape of the D137L tropomyosin is straighter than that of wild-type tropomyosin, it is still capable of binding actin due to this increase in flexibility. We conclude that the conserved, non-canonical Asp-137 destabilizes the local structure resulting in a local flexible region in the middle of tropomyosin that normally is important for tropomyosin steady-state equilibrium position on actin.
位于卷曲螺旋相邻α-螺旋链之间的极性残基通常有助于卷曲螺旋的曲率和柔韧性,而更典型的核心疏水残基则将链退火在一起。在从平滑肌和骨骼肌到细胞质异构体的原肌球蛋白中,第137位残基处高度保守的天冬氨酸将原肌球蛋白卷曲螺旋核心内的负电荷置于一个可能影响原肌球蛋白在肌动蛋白上结合和调节运动所需构象的位置。蛋白水解敏感性表明,用典型的亮氨酸取代第137位天然存在的天冬氨酸通过稳定原肌球蛋白卷曲螺旋增加了链间刚性。现在,我们使用分子动力学直接评估此类突变体引起的卷曲螺旋曲率和柔韧性的变化。正如预期的那样,尽管在第137位残基突变位点附近卷曲螺旋柔韧性略有降低,但观察到沿整个卷曲螺旋的柔韧性出现了非局部性增加。尽管D137L原肌球蛋白的平均形状比野生型原肌球蛋白更直,但由于这种柔韧性增加,它仍然能够结合肌动蛋白。我们得出结论,保守的、非典型的天冬氨酸-137使局部结构不稳定,导致原肌球蛋白中间出现局部柔性区域,这通常对原肌球蛋白在肌动蛋白上的稳态平衡位置很重要。