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桃华山芽孢杆菌(Paenibacillus taohuashanense)sp. nov.,一种从柠条( Caragana kansuensis )根际土壤中分离得到的固氮物种。

Paenibacillus taohuashanense sp. nov., a nitrogen-fixing species isolated from rhizosphere soil of the root of Caragana kansuensis Pojark.

机构信息

State Key Laboratory for Agrobiotechnology, Department of Microbiology and Immunology, College of Biological Sciences, China Agricultural University, Beijing, 100193, People's Republic of China.

出版信息

Antonie Van Leeuwenhoek. 2012 Nov;102(4):735-41. doi: 10.1007/s10482-012-9773-4. Epub 2012 Jul 12.

Abstract

A nitrogen-fixing bacterium, designated strain gs65(T), was isolated from a rhizosphere soil sample of Caragana kansuensis Pojark. Phylogenetic analysis based on a fragment of the nifH gene and the full-length 16S rRNA gene sequence revealed that strain gs65(T) is a member of the genus Paenibacillus. High levels of 16S rRNA gene similarity were found between strain gs65(T) and Paenibacillus borealis DSM 13188(T) (97.5 %), Paenibacillus odorifer ATCC BAA-93(T) (97.3 %), Paenibacillus durus DSM 1735(T) (97.0 %) and Paenibacillus sophorae DSM23020(T) (96.9 %). Levels of 16S rRNA gene sequence similarity between strain gs65(T) and the type strains of other recognized members of the genus Paenibacillus were below 97.0 %. Levels of DNA-DNA relatedness between strain gs65(T) and P. borealis DSM 13188(T), P. odorifer ATCC BAA-93(T) (97.3 %), P. durus DSM 1735(T) and P. sophorae DSM23020(T) were 35.9, 38.0, 34.2 and 35.5 % respectively. The DNA G+C content of strain gs65(T) was determined to be 51.6 mol%. The major fatty acids were found to be iso-C(14:0), anteiso-C(15:0) and iso-C(16:0). On the basis of its phenotypic characteristics and levels of DNA-DNA hybridization, strain gs65(T) is considered to represent a novel species of the genus Paenibacillus, for which the name Paenibacillus taohuashanense sp. nov. is proposed. The type strain is gs65(T) (=CGMCC 1.12175(T) = DSM 25809(T)).

摘要

一株固氮菌,命名为 gs65(T) 菌株,从胡枝子根际土壤样本中分离得到。基于 nifH 基因片段和 16S rRNA 全序列的系统发育分析表明,gs65(T) 菌株是芽孢杆菌属的一个成员。gs65(T) 菌株与解淀粉芽孢杆菌 DSM 13188(T)(97.5%)、恶臭芽孢杆菌 ATCC BAA-93(T)(97.3%)、坚韧芽孢杆菌 DSM 1735(T)(97.0%)和槐糖脂芽孢杆菌 DSM23020(T)(96.9%)的 16S rRNA 基因相似度很高。gs65(T) 菌株与其他已鉴定的芽孢杆菌属成员的模式菌株的 16S rRNA 基因序列相似度均低于 97.0%。gs65(T) 菌株与解淀粉芽孢杆菌 DSM 13188(T)、恶臭芽孢杆菌 ATCC BAA-93(T)(97.3%)、坚韧芽孢杆菌 DSM 1735(T)和槐糖脂芽孢杆菌 DSM23020(T)之间的 DNA-DNA 同源性分别为 35.9%、38.0%、34.2%和 35.5%。gs65(T) 菌株的 DNA G+C 含量为 51.6mol%。主要脂肪酸为 iso-C(14:0)、anteiso-C(15:0)和 iso-C(16:0)。基于其表型特征和 DNA-DNA 杂交水平,gs65(T) 菌株被认为代表了芽孢杆菌属的一个新种,现命名为桃华山芽孢杆菌新种。模式菌株为 gs65(T)=CGMCC 1.12175(T)=DSM 25809(T)。

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