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热带爪蟾的遗传分析。

Genetic analysis of Xenopus tropicalis.

作者信息

Geach Timothy J, Stemple Derek L, Zimmerman Lyle B

机构信息

National Institute for Medical Research, London, England, UK.

出版信息

Methods Mol Biol. 2012;917:69-110. doi: 10.1007/978-1-61779-992-1_5.

DOI:10.1007/978-1-61779-992-1_5
PMID:22956083
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4273174/
Abstract

The pipid frog Xenopus tropicalis has emerged as a powerful new model system for combining genetic and genomic analysis of tetrapod development with robust embryological, molecular, and biochemical assays. Its early development closely resembles that of its well-understood relative X. laevis, from which techniques and reagents can be readily transferred. In contrast to the tetraploid X. laevis, X. tropicalis has a compact diploid genome with strong synteny to those of amniotes. Recently, advances in high-throughput sequencing together with solution-hybridization whole-exome enrichment technology offer powerful strategies for cloning novel mutations as well as reverse genetic identification of sequence lesions in specific genes of interest. Further advantages include the wide range of functional and molecular assays available, the large number of embryos/meioses produced, and the ease of haploid genetics and gynogenesis. The addition of these genetic tools to X. tropicalis provides a uniquely flexible platform for analysis of gene function in vertebrate development.

摘要

滑爪蟾热带爪蟾已成为一个强大的新模型系统,可将四足动物发育的遗传和基因组分析与强大的胚胎学、分子和生化检测相结合。它的早期发育与人们熟知的近亲非洲爪蟾非常相似,技术和试剂可以很容易地从非洲爪蟾转移过来。与四倍体的非洲爪蟾不同,热带爪蟾拥有紧凑的二倍体基因组,与羊膜动物的基因组具有很强的同线性。最近,高通量测序技术的进步以及溶液杂交全外显子富集技术为克隆新突变以及对特定感兴趣基因中的序列损伤进行反向遗传学鉴定提供了强大的策略。其他优势包括可用的功能和分子检测种类繁多、产生的胚胎/减数分裂数量众多,以及单倍体遗传学和雌核发育操作简便。将这些遗传工具添加到热带爪蟾中,为分析脊椎动物发育中的基因功能提供了一个独特灵活的平台。

相似文献

1
Genetic analysis of Xenopus tropicalis.热带爪蟾的遗传分析。
Methods Mol Biol. 2012;917:69-110. doi: 10.1007/978-1-61779-992-1_5.
2
Developmental genetics in Xenopus tropicalis.热带爪蟾的发育遗传学
Methods Mol Biol. 2011;770:77-117. doi: 10.1007/978-1-61779-210-6_4.
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Genetic screens for mutations affecting development of Xenopus tropicalis.对影响热带爪蟾发育的突变进行遗传筛选。
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The genome of the Western clawed frog Xenopus tropicalis.西方爪蟾 Xenopus tropicalis 的基因组。
Science. 2010 Apr 30;328(5978):633-6. doi: 10.1126/science.1183670.

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本文引用的文献

1
Xenopus research: metamorphosed by genetics and genomics.爪蟾研究:遗传学和基因组学带来的变革。
Trends Genet. 2011 Dec;27(12):507-15. doi: 10.1016/j.tig.2011.08.003. Epub 2011 Oct 1.
2
A comparative survey of the frequency and distribution of polymorphism in the genome of Xenopus tropicalis.对非洲爪蟾基因组中多态性的频率和分布的比较调查。
PLoS One. 2011;6(8):e22392. doi: 10.1371/journal.pone.0022392. Epub 2011 Aug 4.
3
Efficient targeted gene disruption in the soma and germ line of the frog Xenopus tropicalis using engineered zinc-finger nucleases.利用工程化锌指核酸酶在非洲爪蟾的体和生殖细胞中进行高效的靶向基因敲除。
Proc Natl Acad Sci U S A. 2011 Apr 26;108(17):7052-7. doi: 10.1073/pnas.1102030108. Epub 2011 Apr 6.
4
A genetic map of Xenopus tropicalis.爪蟾的遗传图谱。
Dev Biol. 2011 Jun 1;354(1):1-8. doi: 10.1016/j.ydbio.2011.03.022. Epub 2011 Mar 31.
5
Evolution of the closely related, sex-related genes DM-W and DMRT1 in African clawed frogs (Xenopus).非洲爪蟾(Xenopus)中密切相关的性别相关基因 DM-W 和 DMRT1 的进化。
Evolution. 2011 Mar;65(3):698-712. doi: 10.1111/j.1558-5646.2010.01163.x. Epub 2010 Nov 2.
6
The secreted integrin ligand nephronectin is necessary for forelimb formation in Xenopus tropicalis.分泌的整合素配体肾胞蛋白对于非洲爪蟾的前肢形成是必需的。
Dev Biol. 2011 Jan 15;349(2):204-12. doi: 10.1016/j.ydbio.2010.10.015. Epub 2010 Oct 23.
7
Paralysis and delayed Z-disc formation in the Xenopus tropicalis unc45b mutant dicky ticker.热带爪蟾unc45b突变体“矮胖先生”中的麻痹和延迟的Z盘形成
BMC Dev Biol. 2010 Jul 16;10:75. doi: 10.1186/1471-213X-10-75.
8
The genome of the Western clawed frog Xenopus tropicalis.西方爪蟾 Xenopus tropicalis 的基因组。
Science. 2010 Apr 30;328(5978):633-6. doi: 10.1126/science.1183670.
9
Remobilization of Tol2 transposons in Xenopus tropicalis.热带爪蟾中Tol2转座子的重新激活
BMC Dev Biol. 2010 Jan 22;10:11. doi: 10.1186/1471-213X-10-11.
10
Absence of heartbeat in the Xenopus tropicalis mutation muzak is caused by a nonsense mutation in cardiac myosin myh6.爪蟾 muzak 基因突变导致的无心搏是由于心肌球蛋白 myh6 的无义突变引起的。
Dev Biol. 2009 Dec 1;336(1):20-9. doi: 10.1016/j.ydbio.2009.09.019. Epub 2009 Sep 19.