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家畜全基因组关联研究进展。

Progress of genome wide association study in domestic animals.

机构信息

Key Laboratory of Chicken Genetics and Breeding, Ministry of Agriculture, Harbin, 150030, People's Republic of China.

出版信息

J Anim Sci Biotechnol. 2012 Aug 22;3(1):26. doi: 10.1186/2049-1891-3-26.

DOI:10.1186/2049-1891-3-26
PMID:22958308
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3506437/
Abstract

Domestic animals are invaluable resources for study of the molecular architecture of complex traits. Although the mapping of quantitative trait loci (QTL) responsible for economically important traits in domestic animals has achieved remarkable results in recent decades, not all of the genetic variation in the complex traits has been captured because of the low density of markers used in QTL mapping studies. The genome wide association study (GWAS), which utilizes high-density single-nucleotide polymorphism (SNP), provides a new way to tackle this issue. Encouraging achievements in dissection of the genetic mechanisms of complex diseases in humans have resulted from the use of GWAS. At present, GWAS has been applied to the field of domestic animal breeding and genetics, and some advances have been made. Many genes or markers that affect economic traits of interest in domestic animals have been identified. In this review, advances in the use of GWAS in domestic animals are described.

摘要

家畜是研究复杂性状分子结构的宝贵资源。尽管在近几十年中,通过对与经济重要性状相关的数量性状基因座(QTL)的定位,已经取得了显著的成果,但由于 QTL 定位研究中使用的标记密度较低,复杂性状的遗传变异并未完全被捕获。全基因组关联研究(GWAS)利用高密度单核苷酸多态性(SNP),为解决这一问题提供了新的途径。GWAS 在解析人类复杂疾病的遗传机制方面取得了令人鼓舞的成果。目前,GWAS 已应用于家畜育种和遗传学领域,并取得了一些进展。许多影响家畜经济性状的基因或标记已被鉴定出来。本文综述了 GWAS 在家畜中的应用进展。

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本文引用的文献

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PLoS One. 2012;7(3):e32578. doi: 10.1371/journal.pone.0032578. Epub 2012 Mar 2.
2
Genome-wide association study identified a narrow chromosome 1 region associated with chicken growth traits.全基因组关联研究鉴定出与鸡生长性状相关的狭窄 1 号染色体区域。
PLoS One. 2012;7(2):e30910. doi: 10.1371/journal.pone.0030910. Epub 2012 Feb 16.
3
A genome wide association scan of bovine tuberculosis susceptibility in Holstein-Friesian dairy cattle.荷斯坦弗里森奶牛牛结核病易感性的全基因组关联扫描。
PLoS One. 2012;7(2):e30545. doi: 10.1371/journal.pone.0030545. Epub 2012 Feb 15.
4
A MITF mutation associated with a dominant white phenotype and bilateral deafness in German Fleckvieh cattle.在德国弗莱维赫牛中,一种与显性白色表型和双侧耳聋相关的 MITF 突变。
PLoS One. 2011;6(12):e28857. doi: 10.1371/journal.pone.0028857. Epub 2011 Dec 12.
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A genome-wide SNP scan reveals novel loci for egg production and quality traits in white leghorn and brown-egg dwarf layers.全基因组 SNP 扫描揭示了白来航鸡和褐壳蛋矮小型鸡产蛋和蛋品质性状的新位点。
PLoS One. 2011;6(12):e28600. doi: 10.1371/journal.pone.0028600. Epub 2011 Dec 8.
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Genome-wide scan identifies loci associated with classical BSE occurrence.全基因组扫描鉴定与经典疯牛病发生相关的基因座。
PLoS One. 2011;6(11):e26819. doi: 10.1371/journal.pone.0026819. Epub 2011 Nov 4.
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Genome-wide association study in Dachshund: identification of a major locus affecting intervertebral disc calcification.全基因组关联研究在达克斯猎犬中:鉴定影响椎间盘钙化的主要位点。
J Hered. 2011 Sep-Oct;102 Suppl 1:S81-6. doi: 10.1093/jhered/esr021.
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Genome-wide association study of body weight in chicken F2 resource population.鸡 F2 资源群体体重的全基因组关联研究。
PLoS One. 2011;6(7):e21872. doi: 10.1371/journal.pone.0021872. Epub 2011 Jul 14.
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Large scale genome-wide association and LDLA mapping study identifies QTLs for boar taint and related sex steroids.大规模全基因组关联和 LDLA 图谱研究鉴定了公猪异味和相关性激素的 QTL。
BMC Genomics. 2011 Jul 13;12:362. doi: 10.1186/1471-2164-12-362.
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PLoS One. 2011;6(7):e21739. doi: 10.1371/journal.pone.0021739. Epub 2011 Jul 1.