网络视图：蛋白质 RNA 相互作用网络的 3D 显示和分析。
NetworkView: 3D display and analysis of protein·RNA interaction networks.
机构信息
Department of Chemistry, University of Illinois at Urbana-Champaign, 505 South Mathews Avenue Urbana, IL 61801, USA.
出版信息
Bioinformatics. 2012 Nov 15;28(22):3000-1. doi: 10.1093/bioinformatics/bts546. Epub 2012 Sep 14.
Abstract
SUMMARY
NetworkView is an application for the display and analysis of protein·RNA interaction networks derived from structure and/or dynamics. These networks typically model individual protein residues and nucleic acid monomers as nodes and their pairwise contacts as edges with associated weights. NetworkView projects the network onto the underlying 3D molecular structure so that visualization and analysis of the network can be coupled to physical and biological properties. NetworkView is implemented as a plugin to the molecular visualization software VMD.
AVAILABILITY AND IMPLEMENTATION
NetworkView is included with VMD, which is available at http://www.ks.uiuc.edu/Research/vmd/. Documentation, tutorials and supporting programs are available at http://www.scs.illinois.edu/schulten/software/.
CONTACT
摘要
摘要
NetworkView 是一款应用程序，用于显示和分析源自结构和/或动力学的蛋白质-RNA 相互作用网络。这些网络通常将单个蛋白质残基和核酸单体建模为节点，并将它们的成对接触建模为带有相关权重的边。NetworkView 将网络投影到基础的 3D 分子结构上，以便可以将网络的可视化和分析与物理和生物性质结合起来。NetworkView 作为分子可视化软件 VMD 的插件实现。
可用性和实现
NetworkView 随 VMD 一起提供，可在 http://www.ks.uiuc.edu/Research/vmd/ 获得。文档、教程和支持程序可在 http://www.scs.illinois.edu/schulten/software/ 获得。
联系方式
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