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光谱和密度泛函理论研究天青蛋白中 1 型铜位点的二级结构变体:还原电位的共价和非局部静电贡献。

Spectroscopic and DFT studies of second-sphere variants of the type 1 copper site in azurin: covalent and nonlocal electrostatic contributions to reduction potentials.

机构信息

Department of Chemistry, Stanford University, Stanford, California 94305, USA.

出版信息

J Am Chem Soc. 2012 Oct 10;134(40):16701-16. doi: 10.1021/ja306438n. Epub 2012 Oct 2.

Abstract

The reduction potentials (E(0)) of type 1 (T1) or blue copper (BC) sites in proteins and enzymes with identical first coordination spheres around the redox active copper ion can vary by ~400 mV. Here, we use a combination of low-temperature electronic absorption and magnetic circular dichroism, electron paramagnetic resonance, resonance Raman, and S K-edge X-ray absorption spectroscopies to investigate a series of second-sphere variants--F114P, N47S, and F114N in Pseudomonas aeruginosa azurin--which modulate hydrogen bonding to and protein-derived dipoles nearby the Cu-S(Cys) bond. Density functional theory calculations correlated to the experimental data allow for the fractionation of the contributions to tuning E(0) into covalent and nonlocal electrostatic components. These are found to be significant, comparable in magnitude, and additive for active H-bonds, while passive H-bonds are mostly nonlocal electrostatic in nature. For dipoles, these terms can be additive to or oppose one another. This study provides a methodology for uncoupling covalency from nonlocal electrostatics, which, when coupled to X-ray crystallographic data, distinguishes specific local interactions from more long-range protein/active interactions, while affording further insight into the second-sphere mechanisms available to the protein to tune the E(0) of electron-transfer sites in biology.

摘要

在具有相同氧化还原活性铜离子第一配位球的蛋白质和酶中,类型 1(T1)或蓝色铜(BC)位点的还原电位(E(0))可以相差约 400 mV。在这里,我们使用低温电子吸收和圆二色性、电子顺磁共振、共振拉曼和 S K 边 X 射线吸收光谱的组合,研究了一系列第二壳层变体 - 铜绿假单胞菌菌蓝蛋白中的 F114P、N47S 和 F114N - 这些变体调节氢键和附近 Cu-S(Cys) 键的蛋白衍生偶极子。与实验数据相关的密度泛函理论计算允许将调谐 E(0)的贡献分为共价和非局部静电分量。发现这些对于活性氢键是重要的、大小相当且可加的,而对于被动氢键,其主要是非局部静电的。对于偶极子,这些项可以相加或相互抵消。这项研究提供了一种将共价键与非局部静电解耦的方法,当与 X 射线晶体学数据结合时,该方法可以将特定的局部相互作用与更远程的蛋白质/活性相互作用区分开来,同时进一步深入了解蛋白质可用的第二壳层机制来调节生物学中电子转移位点的 E(0)。

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