Department of Chemical Engineering and Materials Science, Michigan State University, East Lansing, MI, USA.
Proteomics. 2012 Nov;12(22):3273-85. doi: 10.1002/pmic.201200255.
Understanding the functional roles of all the molecules in cells is an ultimate goal of modern biology. An important facet is to understand the functional contributions from intermolecular interactions, both within a class of molecules (e.g. protein-protein) or between classes (e.g. protein-DNA). While the technologies for analyzing protein-protein and protein-DNA interactions are well established, the field of protein-lipid interactions is still relatively nascent. Here, we review the current status of the experimental and computational approaches for detecting and analyzing protein-lipid interactions. Experimental technologies fall into two principal categories, namely solution-based and array-based methods. Computational methods include large-scale data-driven analyses and predictions/dynamic simulations based on prior knowledge of experimentally identified interactions. Advances in the experimental technologies have led to improved computational analyses and vice versa, thereby furthering our understanding of protein-lipid interactions and their importance in biological systems.
了解细胞中所有分子的功能角色是现代生物学的终极目标。一个重要方面是了解分子间相互作用的功能贡献,包括同一类分子(如蛋白质-蛋白质)或不同类分子(如蛋白质-DNA)之间的相互作用。虽然分析蛋白质-蛋白质和蛋白质-DNA 相互作用的技术已经成熟,但蛋白质-脂质相互作用领域仍然相对较新。在这里,我们回顾了检测和分析蛋白质-脂质相互作用的实验和计算方法的现状。实验技术主要分为两类,即基于溶液的方法和基于阵列的方法。计算方法包括基于大规模数据驱动的分析和基于先前实验确定的相互作用的预测/动态模拟。实验技术的进步促进了计算分析的改进,反之亦然,从而进一步加深了我们对蛋白质-脂质相互作用及其在生物系统中的重要性的理解。