产乙醇运动发酵单胞菌亚种运动型中心株 ATCC 29191 的全基因组序列。
Complete genome sequence of the ethanol-producing Zymomonas mobilis subsp. mobilis centrotype ATCC 29191.
机构信息
Department of Genetics & Biotechnology, Faculty of Biology, University of Athens, Panepistimiopolis, Athens, Greece.
出版信息
J Bacteriol. 2012 Nov;194(21):5966-7. doi: 10.1128/JB.01398-12.
Abstract
Zymomonas mobilis is an ethanologenic bacterium that has been studied for use in biofuel production. Of the sequenced Zymomonas strains, ATCC 29191 has been described as the phenotypic centrotype of Zymomonas mobilis subsp. mobilis, the taxon that harbors the highest ethanol-producing Z. mobilis strains. ATCC 29191 was isolated in Kinshasa, Congo, from palm wine fermentations. This strain is reported to be a robust levan producer, while in recent years it has been employed in studies addressing Z. mobilis respiration. Here we announce the finishing and annotation of the ATCC 29191 genome, which comprises one chromosome and three plasmids.
摘要
运动发酵单胞菌是一种能够产生乙醇的细菌，已被研究用于生物燃料生产。在已测序的运动发酵单胞菌菌株中，ATCC 29191 被描述为运动发酵单胞菌亚种运动发酵单胞菌的表型中心型，该分类群包含最高产乙醇的运动发酵单胞菌菌株。ATCC 29191 是从刚果民主共和国金沙萨的棕榈酒发酵中分离出来的。据报道，该菌株是一种强有力的蔗聚糖生产菌，而近年来，它已被用于研究运动发酵单胞菌的呼吸作用。在这里，我们宣布完成了 ATCC 29191 基因组的测序和注释，该基因组由一条染色体和三个质粒组成。
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本文引用的文献
1
Electron transport and oxidative stress in Zymomonas mobilis respiratory mutants.运动发酵单胞菌呼吸突变体中的电子传递和氧化应激。
Arch Microbiol. 2012 Jun;194(6):461-71. doi: 10.1007/s00203-011-0785-7. Epub 2012 Jan 7.
2
Genome sequence of the ethanol-producing Zymomonas mobilis subsp. mobilis lectotype strain ATCC 10988.产乙醇运动发酵单胞菌亚种运动发酵单胞菌模式菌株 ATCC 10988 的全基因组序列。
J Bacteriol. 2011 Sep;193(18):5051-2. doi: 10.1128/JB.05395-11. Epub 2011 Jul 1.
3
Improved genome annotation for Zymomonas mobilis.运动发酵单胞菌基因组注释的改进
Nat Biotechnol. 2009 Oct;27(10):893-4. doi: 10.1038/nbt1009-893.
4
Velvet: algorithms for de novo short read assembly using de Bruijn graphs.《天鹅绒：使用德布鲁因图进行从头短读长拼接的算法》
Genome Res. 2008 May;18(5):821-9. doi: 10.1101/gr.074492.107. Epub 2008 Mar 18.
5
NADH dehydrogenase deficiency results in low respiration rate and improved aerobic growth of Zymomonas mobilis.烟酰胺腺嘌呤二核苷酸（NADH）脱氢酶缺乏会导致运动发酵单胞菌的呼吸速率降低以及有氧生长得到改善。
Microbiology (Reading). 2008 Mar;154(Pt 3):989-994. doi: 10.1099/mic.0.2007/012682-0.
6
Zymomonas mobilis for fuel ethanol and higher value products.用于生产燃料乙醇和高附加值产品的运动发酵单胞菌。
Adv Biochem Eng Biotechnol. 2007;108:263-88. doi: 10.1007/10_2007_060.
7
Physiology of Zymomonas mobilis: some unanswered questions.运动发酵单胞菌的生理学：一些未解决的问题。
Adv Microb Physiol. 2006;51:73-117. doi: 10.1016/S0065-2911(06)51002-1.
8
Comparison of ethanol production by different zymomonas strains.不同运动发酵单胞菌菌株的乙醇生产比较。
Appl Environ Microbiol. 1981 Apr;41(4):889-93. doi: 10.1128/aem.41.4.889-893.1981.
9
Genome sequencing in microfabricated high-density picolitre reactors.微制造高密度皮升反应器中的基因组测序
Nature. 2005 Sep 15;437(7057):376-80. doi: 10.1038/nature03959. Epub 2005 Jul 31.
10
ACT: the Artemis Comparison Tool.ACT：阿耳忒弥斯比较工具。
Bioinformatics. 2005 Aug 15;21(16):3422-3. doi: 10.1093/bioinformatics/bti553. Epub 2005 Jun 23.
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