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两个新世界竹子——巨竹和硬叶刚竹(禾本科)的质体基因组序列扩展了竹亚科的系统发育基因组学理解。

Plastome sequences of two New World bamboos--Arundinaria gigantea and Cryptochloa strictiflora (Poaceae)--extend phylogenomic understanding of Bambusoideae.

机构信息

Department of Biological Sciences, Northern Illinois University, DeKalb, Illinois 60115-2861, USA.

出版信息

Am J Bot. 2012 Dec;99(12):1951-61. doi: 10.3732/ajb.1200365. Epub 2012 Dec 5.

Abstract

PREMISE OF THE STUDY

Two New World species of Bambusoideae, Arundinaria gigantea and Crytpochloa strictiflora, were investigated in a phylogenomic context. Complete plastome sequences have been previously determined and analyzed for nine bambusoid species that exclusively represent Old World lineages. The addition of New World species provides more complete information on relationships within Bambusoideae. •

METHODS

Plastomes from A. gigantea and C. strictiflora were sequenced using Sanger methods. Phylogenomic and divergence estimate analyses were conducted on both species with 23 other Poaceae. •

KEY RESULTS

Phylogenomic and divergence analyses suggested that A. gigantea diverged from within Arundinarieae between 1.94-3.92 mya and that C. strictiflora diverged as the sister to tropical woody species between 24.83 and 40.22 mya. These results are correlated with modern relative diversities in the two lineages. •

CONCLUSIONS

The two New World bamboos show unique plastome features accumulated and maintained in biogeographic isolation from Old World taxa. The overall evidence for A. gigantea is consistent with recent dispersal, and that for C. strictiflora is consistent with vicariance.

摘要

研究前提

本研究以两个新世界的竹亚科物种,巨竹和刚毛野古草为对象,在系统基因组学背景下进行了研究。此前已经确定并分析了 9 种仅代表旧世界谱系的竹亚科物种的完整质体序列。新世界物种的加入为竹亚科内的关系提供了更完整的信息。

方法

使用 Sanger 方法对巨竹和刚毛野古草的质体进行测序。对 23 种其他禾本科植物的这两个物种进行了系统基因组学和分化估计分析。

结果

系统基因组学和分化分析表明,巨竹在 1.94-3.92 百万年前从竹亚科内部分化而来,刚毛野古草与热带木本物种在 24.83 至 40.22 百万年前分化为姐妹种。这些结果与这两个谱系在现代的相对多样性相关。

结论

这两个新世界的竹子表现出独特的质体特征,这些特征是在与旧世界分类群的生物地理隔离中积累和维持的。巨竹的整体证据与最近的扩散一致,而刚毛野古草的证据则与地理隔离一致。

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