Burke Sean V, Clark Lynn G, Triplett Jimmy K, Grennan Colin P, Duvall Melvin R
Department of Biological Sciences, 1425 W. Lincoln Hwy, Northern Illinois University, DeKalb, Illinois 60115-2861 USA.
Ecology, Evolution and Organismal Biology, 251 Bessey Hall, Iowa State University, Ames, Iowa 50011-1020 USA.
Am J Bot. 2014 May;101(5):886-91. doi: 10.3732/ajb.1400063. Epub 2014 May 7.
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New World Bambusoideae have only recently been studied in a phylogenomic context. Plastome sequences were determined and analyzed from Arundinaria appalachiana, A. tecta, and Olyra latifolia, to refine our knowledge of their evolution and historical biogeography. A correction is noted regarding an error in an earlier report on the biogeography of Cryptochloa•
Single-end DNA libraries were prepared and sequenced on the Illumina platform. Complete plastomes were assembled and analyzed with 13 other Poaceae.•
Complete sampling in Arundinaria and an additional species of Olyreae gave a more detailed picture of their evolution/historical biogeography. Phylogenomic analyses indicated that the first major divergence in Arundinaria occurred around 2.3 to 3.2 mya and that Arundinaria tecta and A appalachiana diverged from their common ancestor around 0.57 to 0.82 mya. Estimates of the divergence of Olyra latifolia from Cryptochloa strictiflora ranged from 14.6 to 20.7 mya. The age of the stem node of Olyreae ranged from an estimated 26.9 to 38.2 mya.•
Estimates of divergences in Arundinaria can be correlated with paleoclimatic events including an early Pliocene warming, subsequent cooling, and North American glaciations. Discriminating between alternate evolutionary/biogeographic scenarios in Olyreae is challenging.
新世界竹亚科最近才在系统基因组学背景下得到研究。测定并分析了来自阿巴拉契亚青篱竹、硬青篱竹和阔叶奥利亚竹的质体基因组序列,以完善我们对其进化和历史生物地理学的认识。针对早期关于隐花草生物地理学报告中的一个错误给出了更正。
制备单端DNA文库并在Illumina平台上进行测序。组装完整的质体基因组并与其他13种禾本科植物进行分析。
对青篱竹属和奥利亚竹属的另一个物种进行完整采样,更详细地描绘了它们的进化/历史生物地理学。系统基因组学分析表明,青篱竹属的首次重大分化发生在约230万至320万年前,硬青篱竹和阿巴拉契亚青篱竹从它们的共同祖先分化出来的时间约为57万至82万年前。阔叶奥利亚竹与窄花隐花草的分化估计时间为146万至207万年前。奥利亚竹属茎节点的年龄估计在269万至382万年前之间。
青篱竹属分化的估计时间可以与古气候事件相关联,包括上新世早期变暖、随后的变冷以及北美冰川作用。区分奥利亚竹属中不同的进化/生物地理情景具有挑战性。