Suppr超能文献

曲面的张力模拟。

The tension of a curved surface from simulation.

机构信息

National Heart, Lung, and Blood Institute, National Institutes of Health, 50 South Drive, Bethesda, Maryland 20892, USA.

出版信息

J Chem Phys. 2012 Dec 21;137(23):234101. doi: 10.1063/1.4769880.

Abstract

This paper demonstrates a method for calculating the tension of a system with a curved interface from a molecular dynamics simulation. To do so, the pressure of a subset of the system is determined by applying a local (virtual) mechanical deformation, fitting the response to that of a bulk fluid, and then using the Young-Laplace equation to infer the tension of the interface. The accuracy of the method is tested by calculating the local pressure of a series of water simulations at various external pressures. The tension of a simulated curved octane-water interface is computed with the method and compares well with the planar tension (≈ 46.7 dyn/cm). Finally, an ambiguity is resolved between the Harasima and Irving-Kirkwood methods of calculating the local pressure as a means for computing the tension.

摘要

本文展示了一种从分子动力学模拟中计算具有曲面界面系统张力的方法。具体来说,通过对系统的一部分施加局部(虚拟)机械变形,拟合其对整体流体的响应,然后利用杨氏拉普拉斯方程推断界面的张力。该方法的准确性通过在不同外部压力下对一系列水模拟的局部压力进行计算来验证。使用该方法计算模拟的八烷-水弯曲界面的张力,并与平面张力(≈46.7 dyn/cm)进行比较。最后,解决了 Harasima 和 Irving-Kirkwood 方法在计算局部压力以计算张力时的歧义。

相似文献

1
The tension of a curved surface from simulation.曲面的张力模拟。
J Chem Phys. 2012 Dec 21;137(23):234101. doi: 10.1063/1.4769880.
2
Surface tension of a Lennard-Jones liquid under supersaturation.过饱和状态下 Lennard-Jones 液体的表面张力
Phys Chem Chem Phys. 2005 Aug 7;7(15):2928-35. doi: 10.1039/b507106b. Epub 2005 Jul 4.

本文引用的文献

1
Computing the local pressure in molecular dynamics simulations.计算分子动力学模拟中的局域压力。
J Phys Condens Matter. 2012 Jul 18;24(28):284133. doi: 10.1088/0953-8984/24/28/284133. Epub 2012 Jun 27.
5
Negative membrane curvature as a cue for subcellular localization of a bacterial protein.负膜曲率作为一种细菌蛋白亚细胞定位的线索。
Proc Natl Acad Sci U S A. 2009 Aug 11;106(32):13541-5. doi: 10.1073/pnas.0906851106. Epub 2009 Jul 28.
7
CHARMM: the biomolecular simulation program.CHARMM:生物分子模拟程序。
J Comput Chem. 2009 Jul 30;30(10):1545-614. doi: 10.1002/jcc.21287.
9
3D pressure field in lipid membranes and membrane-protein complexes.脂质膜和膜蛋白复合物中的三维压力场。
Phys Rev Lett. 2009 Feb 20;102(7):078101. doi: 10.1103/PhysRevLett.102.078101. Epub 2009 Feb 19.

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验