Evans James E, Browning Nigel D
Pacific Northwest National Laboratory, Environmental Molecular Sciences Laboratory, 3335 Innovation Boulevard, Richland, WA 99354, USA.
Microscopy (Oxf). 2013 Feb;62(1):147-56. doi: 10.1093/jmicro/dfs081. Epub 2013 Jan 12.
Biological processes occur on a wide range of spatial and temporal scales: from femtoseconds to hours and from angstroms to meters. Many new biological insights can be expected from a better understanding of the processes that occur on these very fast and very small scales. In this regard, new instruments that use fast X-ray or electron pulses are expected to reveal novel mechanistic details for macromolecular protein dynamics. To ensure that any observed conformational change is physiologically relevant and not constrained by 3D crystal packing, it would be preferable for experiments to utilize small protein samples such as single particles or 2D crystals that mimic the target protein's native environment. These samples are not typically amenable to X-ray analysis, but transmission electron microscopy has imaged such sample geometries for over 40 years using both direct imaging and diffraction modes. While conventional transmission electron microscopes (TEM) have visualized biological samples with atomic resolution in an arrested or frozen state, the recent development of the dynamic TEM (DTEM) extends electron microscopy into a dynamic regime using pump-probe imaging. A new second-generation DTEM, which is currently being constructed, has the potential to observe live biological processes with unprecedented spatiotemporal resolution by using pulsed electron packets to probe the sample on micro- and nanosecond timescales. This article reviews the experimental parameters necessary for coupling DTEM with in situ liquid microscopy to enable direct imaging of protein conformational dynamics in a fully hydrated environment and visualize reactions propagating in real time.
从飞秒到小时,从埃到米。通过更好地理解在这些极快和极小尺度上发生的过程,可以期待获得许多新的生物学见解。在这方面,使用快速X射线或电子脉冲的新仪器有望揭示大分子蛋白质动力学的新机制细节。为确保任何观察到的构象变化在生理上是相关的,且不受三维晶体堆积的限制,实验最好使用小蛋白质样品,如模拟目标蛋白质天然环境的单颗粒或二维晶体。这些样品通常不适合进行X射线分析,但透射电子显微镜已经使用直接成像和衍射模式对这种样品几何形状进行了40多年的成像。虽然传统透射电子显微镜(TEM)已经在静态或冷冻状态下以原子分辨率观察生物样品,但动态透射电子显微镜(DTEM)的最新发展通过泵浦探针成像将电子显微镜扩展到动态领域。目前正在建造的新一代DTEM有潜力通过使用脉冲电子束在微秒和纳秒时间尺度上探测样品,以前所未有的时空分辨率观察生物活体过程。本文综述了将DTEM与原位液体显微镜耦合以在完全水合环境中直接成像蛋白质构象动力学并实时可视化反应传播所需的实验参数。