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超声生物显微镜图像分割用于评估斑马鱼心脏功能。

Ultrasound bio-microscopic image segmentation for evaluation of zebrafish cardiac function.

机构信息

Department of Electronic and Computer Engineering, The Hong Kong University of Science and Technology, Hong Kong SAR, China.

出版信息

IEEE Trans Ultrason Ferroelectr Freq Control. 2013 Apr;60(4):718-26. doi: 10.1109/TUFFC.2013.2620.

DOI:10.1109/TUFFC.2013.2620
PMID:23549532
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3750995/
Abstract

Zebrafish can fully regenerate their myocardium after ventricular resection without evidence of scars. This extraordinary regenerative ability provides an excellent model system to study the activation of the regenerative potential for human heart tissue. In addition to the morphology, it is vital to understand the cardiac function of zebrafish. To characterize adult zebrafish cardiac function, an ultrasound biomicroscope (UBM) was customized for real-time imaging of the zebrafish heart (about 1 mm in diameter) at a resolution of around 37 μm. Moreover, we developed an image segmentation algorithm to track the cardiac boundary and measure the dynamic size of the zebrafish heart for further quantification of zebrafish cardiac function. The effectiveness and accuracy of the proposed segmentation algorithm were verified on a tissuemimicking phantom and in vivo zebrafish echocardiography. The quantitative evaluation demonstrated that the accuracy of the proposed algorithm is comparable to the manual delineation by experts.

摘要

斑马鱼在心室切除后可以完全再生心肌,没有疤痕的证据。这种非凡的再生能力为研究人类心脏组织的再生潜能提供了一个极好的模型系统。除了形态学,了解斑马鱼的心脏功能也至关重要。为了描述成年斑马鱼的心脏功能,我们专门为实时成像定制了一个超声生物显微镜 (UBM),可以以大约 37 微米的分辨率对直径约为 1 毫米的斑马鱼心脏进行成像。此外,我们开发了一种图像分割算法来跟踪心脏边界并测量斑马鱼心脏的动态大小,以便进一步量化斑马鱼的心脏功能。所提出的分割算法的有效性和准确性已在组织模拟体和体内斑马鱼超声心动图中得到验证。定量评估表明,该算法的准确性可与专家的手动勾画相媲美。

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Advanced echocardiography in adult zebrafish reveals delayed recovery of heart function after myocardial cryoinjury.成年斑马鱼的高级超声心动图显示心肌冷冻损伤后心脏功能恢复延迟。
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本文引用的文献

1
Correlation based 3-D segmentation of the left ventricle in pediatric echocardiographic images using radio-frequency data.基于相关的射频数据的儿科超声心动图图像左心室的 3D 分割。
Ultrasound Med Biol. 2011 Sep;37(9):1409-20. doi: 10.1016/j.ultrasmedbio.2011.05.005. Epub 2011 Jun 16.
2
Anechoic sphere phantoms for estimating 3-D resolution of very-high-frequency ultrasound scanners.用于估计甚高频超声扫描仪 3D 分辨率的无回声球型体模。
IEEE Trans Ultrason Ferroelectr Freq Control. 2010 Oct;57(10):2284-92. doi: 10.1109/TUFFC.2010.1689.
3
A high-frame rate duplex ultrasound biomicroscopy for small animal imaging in vivo.一种用于小动物体内成像的高帧率双功能超声生物显微镜。
IEEE Trans Biomed Eng. 2008 Aug;55(8):2039-49. doi: 10.1109/TBME.2008.919110.
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Magnetic resonance microscopy of the adult zebrafish.成年斑马鱼的磁共振显微镜检查。
Zebrafish. 2006;3(4):431-9. doi: 10.1089/zeb.2006.3.431.
5
Active contours without edges.无边缘活动轮廓。
IEEE Trans Image Process. 2001;10(2):266-77. doi: 10.1109/83.902291.
6
Speckle tracking methods for ultrasonic elasticity imaging using short-time correlation.基于短时相关性的超声弹性成像散斑追踪方法。
IEEE Trans Ultrason Ferroelectr Freq Control. 1999;46(1):82-96. doi: 10.1109/58.741427.
7
In vivo cardiac imaging of adult zebrafish using high frequency ultrasound (45-75 MHz).使用高频超声(45 - 75兆赫兹)对成年斑马鱼进行体内心脏成像。
Ultrasound Med Biol. 2008 Jan;34(1):31-9. doi: 10.1016/j.ultrasmedbio.2007.07.002. Epub 2007 Sep 7.
8
Ultrasound image segmentation: a survey.超声图像分割:综述
IEEE Trans Med Imaging. 2006 Aug;25(8):987-1010. doi: 10.1109/tmi.2006.877092.
9
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PLoS Biol. 2006 Aug;4(8):e260. doi: 10.1371/journal.pbio.0040260.
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Update and rationale for ongoing acute myocardial infarction trials: combination therapy, facilitation, and myocardial preservation.急性心肌梗死现行试验的更新内容及理论依据:联合治疗、促进疗法及心肌保护
Am Heart J. 2006 Jun;151(6 Suppl):S30-9. doi: 10.1016/j.ahj.2006.04.011.