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细胞分辨率连接组学:密集神经回路重建的挑战。

Cellular-resolution connectomics: challenges of dense neural circuit reconstruction.

机构信息

Structure of Neocortical Circuits Group, Max Planck Institute of Neurobiology, Munich-Martinsried, Germany.

出版信息

Nat Methods. 2013 Jun;10(6):501-7. doi: 10.1038/nmeth.2476.

DOI:10.1038/nmeth.2476
PMID:23722209
Abstract

Neuronal networks are high-dimensional graphs that are packed into three-dimensional nervous tissue at extremely high density. Comprehensively mapping these networks is therefore a major challenge. Although recent developments in volume electron microscopy imaging have made data acquisition feasible for circuits comprising a few hundreds to a few thousands of neurons, data analysis is massively lagging behind. The aim of this perspective is to summarize and quantify the challenges for data analysis in cellular-resolution connectomics and describe current solutions involving online crowd-sourcing and machine-learning approaches.

摘要

神经网络是高维图,它们以极高的密度打包到三维神经组织中。因此,全面绘制这些网络是一个主要挑战。尽管最近在容积电子显微镜成像方面的发展使得获取包含几百到几千个神经元的电路的数据成为可能,但数据分析却严重滞后。本文的目的是总结和量化细胞分辨率连接组学中数据分析的挑战,并描述涉及在线众包和机器学习方法的当前解决方案。

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本文引用的文献

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Connectomic reconstruction of the inner plexiform layer in the mouse retina.鼠视网膜内丛状层的连接组重建。
Nature. 2013 Aug 8;500(7461):168-74. doi: 10.1038/nature12346.
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Imaging human connectomes at the macroscale.宏观尺度下的人类连接组成像。
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A hierarchically annotated dataset drives tangled filament recognition in digital neuron reconstruction.一个分层注释的数据集推动了数字神经元重建中的缠结丝识别。
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Tracing nerve fibers with volume electron microscopy to quantitatively analyze brain connectivity.利用体式电子显微镜追踪神经纤维,对脑连接进行定量分析。
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The connectome of a decision-making neural network.决策神经网络的连接组图谱。
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The structure of the nervous system of the nematode Caenorhabditis elegans.秀丽隐杆线虫的神经系统结构。
Philos Trans R Soc Lond B Biol Sci. 1986 Nov 12;314(1165):1-340. doi: 10.1098/rstb.1986.0056.
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3D segmentation of SBFSEM images of neuropil by a graphical model over supervoxel boundaries.基于超体素边界的图形模型对神经突 SBFSEM 图像进行 3D 分割。
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