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本文引用的文献

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The dynamic process of β(2)-adrenergic receptor activation.β(2)-肾上腺素能受体激活的动态过程。
Cell. 2013 Jan 31;152(3):532-42. doi: 10.1016/j.cell.2013.01.008.
2
Optimization of the additive CHARMM all-atom protein force field targeting improved sampling of the backbone φ, ψ and side-chain χ(1) and χ(2) dihedral angles.针对主链φ、ψ以及侧链χ(1)和χ(2)二面角改进采样的CHARMM全原子蛋白质加性力场的优化。
J Chem Theory Comput. 2012 Sep 11;8(9):3257-3273. doi: 10.1021/ct300400x. Epub 2012 Jul 18.
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The GPCR Network: a large-scale collaboration to determine human GPCR structure and function.G 蛋白偶联受体网络:一个旨在确定人类 G 蛋白偶联受体结构和功能的大型合作项目。
Nat Rev Drug Discov. 2013 Jan;12(1):25-34. doi: 10.1038/nrd3859. Epub 2012 Dec 14.
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Grand opening of structure-guided design for novel opioids.新型阿片类药物结构导向设计的盛大开业。
Trends Pharmacol Sci. 2013 Jan;34(1):6-12. doi: 10.1016/j.tips.2012.10.002. Epub 2012 Nov 3.
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Structure of the δ-opioid receptor bound to naltrindole.δ-阿片受体与纳曲吲哚结合的结构。
Nature. 2012 May 16;485(7398):400-4. doi: 10.1038/nature11111.
6
Structure of the nociceptin/orphanin FQ receptor in complex with a peptide mimetic.阿片肽孤儿受体与肽模拟物复合物的结构。
Nature. 2012 May 16;485(7398):395-9. doi: 10.1038/nature11085.
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Structure of the human κ-opioid receptor in complex with JDTic.人κ-阿片受体与 JDTic 复合物的结构。
Nature. 2012 Mar 21;485(7398):327-32. doi: 10.1038/nature10939.
8
Crystal structure of the µ-opioid receptor bound to a morphinan antagonist.μ-阿片受体与吗啡喃拮抗剂结合的晶体结构
Nature. 2012 Mar 21;485(7398):321-6. doi: 10.1038/nature10954.
9
Crystal structure of the β2 adrenergic receptor-Gs protein complex.β2 肾上腺素能受体-Gs 蛋白复合物的晶体结构。
Nature. 2011 Jul 19;477(7366):549-55. doi: 10.1038/nature10361.
10
Consensus 3D model of μ-opioid receptor ligand efficacy based on a quantitative Conformationally Sampled Pharmacophore.基于定量构象采样药效团的 μ 阿片受体配体效力共识 3D 模型。
J Phys Chem B. 2011 Jun 9;115(22):7487-96. doi: 10.1021/jp202542g. Epub 2011 May 12.

μ 阿片受体激活的分子细节。

Molecular details of the activation of the μ opioid receptor.

机构信息

Department of Pharmaceutical Sciences, University of Maryland School of Pharmacy, Baltimore, Maryland 21201, USA.

出版信息

J Phys Chem B. 2013 Jul 3;117(26):7907-17. doi: 10.1021/jp404238n. Epub 2013 Jun 24.

DOI:10.1021/jp404238n
PMID:23758404
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3735350/
Abstract

Molecular details of μ opioid receptor activations were obtained using molecular dynamics simulations of the receptor in the presence of three agonists, three antagonists, and a partial agonist and on the constitutively active T279K mutant. Agonists have a higher probability of direct interactions of their basic nitrogen (N) with Asp147 as compared with antagonists, indicating that direct ligand-Asp147 interactions modulate activation. Medium-size substituents on the basic N of antagonists lead to steric interactions that perturb N-Asp147 interactions, while additional favorable interactions occur with larger basic N substituents, such as in N-phenethylnormorphine, restoring N-Asp147 interactions, leading to agonism. With the orvinols, the increased size of the C19 substituent in buprenorphine over diprenorphine leads to increased interactions with residues adjacent to Asp147, partially overcoming the presence of the cyclopropyl N substituent, such that buprenorphine is a partial agonist. Results also indicate different conformational properties of the intracellular regions of the transmembrane helices in agonists versus antagonists.

摘要

使用存在三种激动剂、三种拮抗剂和一种部分激动剂以及组成型激活的 T279K 突变体的μ阿片受体的分子动力学模拟,获得了μ阿片受体激活的分子细节。与拮抗剂相比,激动剂的碱性氮 (N) 更有可能与天冬氨酸 147 发生直接相互作用,这表明直接配体-天冬氨酸 147 相互作用调节激活。拮抗剂碱性 N 上的中等大小取代基会导致空间位阻相互作用,从而破坏 N-天冬氨酸 147 相互作用,而较大的碱性 N 取代基会产生额外的有利相互作用,例如在 N-苯乙基-去甲吗啡中,恢复 N-天冬氨酸 147 相互作用,从而导致激动作用。对于奥芬醇类药物,丁丙诺啡中 C19 取代基的增大超过二丙诺啡,导致与天冬氨酸 147 相邻的残基的相互作用增加,部分克服了环丙基 N 取代基的存在,使得丁丙诺啡成为部分激动剂。结果还表明,激动剂与拮抗剂的跨膜螺旋细胞内区域具有不同的构象特性。