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染色质与可变剪接调控的关联

Chromatin's thread to alternative splicing regulation.

作者信息

Iannone Camilla, Valcárcel Juan

机构信息

Centre de Regulació Genòmica (CRG), Barcelona, Spain.

出版信息

Chromosoma. 2013 Dec;122(6):465-74. doi: 10.1007/s00412-013-0425-x. Epub 2013 Aug 3.

DOI:10.1007/s00412-013-0425-x
PMID:23912688
Abstract

Intron removal (pre-mRNA splicing) is a necessary step for expression of most genes in higher eukaryotes. Alternative splice site selection is a prevalent mechanism that diversifies genome outputs and offers ample opportunities for gene regulation in these organisms. Pre-mRNA splicing occurs co-transcriptionally and is influenced by features in chromatin structure, including nucleosome density and epigenetic modifications. We review here the molecular mechanisms by which the reciprocal interplay between chromatin and RNA processing can contribute to alternative splicing regulation.

摘要

内含子去除(前体mRNA剪接)是高等真核生物中大多数基因表达的必要步骤。可变剪接位点选择是一种普遍存在的机制,它使基因组输出多样化,并为这些生物中的基因调控提供了充足的机会。前体mRNA剪接在转录过程中同时发生,并受染色质结构特征的影响,包括核小体密度和表观遗传修饰。我们在此综述染色质与RNA加工之间的相互作用有助于可变剪接调控的分子机制。

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Chromatin's thread to alternative splicing regulation.染色质与可变剪接调控的关联
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2
Chromatin density and splicing destiny: on the cross-talk between chromatin structure and splicing.染色质密度与剪接命运:染色质结构与剪接的相互作用。
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3
Chromatin and epigenetic regulation of pre-mRNA processing.染色质和前体 mRNA 加工的表观遗传调控。
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Connecting the dots: chromatin and alternative splicing in EMT.关联要点:上皮-间质转化中的染色质与可变剪接
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本文引用的文献

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DNase I-hypersensitive exons colocalize with promoters and distal regulatory elements.DNase I 超敏外显子与启动子和远端调控元件共定位。
Nat Genet. 2013 Aug;45(8):852-9. doi: 10.1038/ng.2677. Epub 2013 Jun 23.
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SR proteins collaborate with 7SK and promoter-associated nascent RNA to release paused polymerase.SR 蛋白与 7SK 和启动子相关的新生 RNA 合作释放暂停的聚合酶。
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Stress-induced transcriptional readthrough into neighboring genes is linked to intron retention.应激诱导的转录通读至邻近基因与内含子保留有关。
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Gene body methylation in cancer: molecular mechanisms and clinical applications.癌症中基因体甲基化:分子机制与临床应用。
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The SWI/SNF subunit BRG1 affects alternative splicing by changing RNA binding factor interactions with nascent RNA.SWI/SNF 亚基 BRG1 通过改变 RNA 结合因子与新生 RNA 的相互作用来影响可变剪接。
Mol Genet Genomics. 2022 Mar;297(2):463-484. doi: 10.1007/s00438-022-01863-9. Epub 2022 Feb 20.
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Splicing alterations in healthy aging and disease.健康衰老和疾病中的剪接改变。
Wiley Interdiscip Rev RNA. 2021 Jul;12(4):e1643. doi: 10.1002/wrna.1643. Epub 2021 Feb 9.
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DNA methylation directs microRNA biogenesis in mammalian cells.DNA 甲基化指导哺乳动物细胞中的 microRNA 生物发生。
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9
Prenatal Glucocorticoid Exposure Results in Changes in Gene Transcription and DNA Methylation in the Female Juvenile Guinea Pig Hippocampus Across Three Generations.产前糖皮质激素暴露导致三代雌性幼年豚鼠海马中的基因转录和 DNA 甲基化发生变化。
Sci Rep. 2019 Dec 3;9(1):18211. doi: 10.1038/s41598-019-54456-9.
10
Histone H1.5 binds over splice sites in chromatin and regulates alternative splicing.组蛋白 H1.5 结合在染色质的剪接位点上,并调节可变剪接。
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探索基因组的三维结构:解读染色质相互作用数据。
Nat Rev Genet. 2013 Jun;14(6):390-403. doi: 10.1038/nrg3454. Epub 2013 May 9.
4
DNA-methylation effect on cotranscriptional splicing is dependent on GC architecture of the exon-intron structure.DNA 甲基化对共转录剪接的影响取决于外显子-内含子结构的 GC 结构。
Genome Res. 2013 May;23(5):789-99. doi: 10.1101/gr.143503.112. Epub 2013 Mar 15.
5
Dynamic integration of splicing within gene regulatory pathways.基因调控通路中剪接的动态整合。
Cell. 2013 Mar 14;152(6):1252-69. doi: 10.1016/j.cell.2013.02.034.
6
Reflections on the history of pre-mRNA processing and highlights of current knowledge: a unified picture.对前体 mRNA 处理历史的反思及当前知识要点:一幅统一的画面。
RNA. 2013 Apr;19(4):443-60. doi: 10.1261/rna.038596.113. Epub 2013 Feb 25.
7
Precise maps of RNA polymerase reveal how promoters direct initiation and pausing.精确的 RNA 聚合酶图谱揭示了启动子如何指导起始和暂停。
Science. 2013 Feb 22;339(6122):950-3. doi: 10.1126/science.1229386.
8
Two new and distinct roles for Drosophila Argonaute-2 in the nucleus: alternative pre-mRNA splicing and transcriptional repression.果蝇 Argonaute-2 在核内的两个新的和不同的作用:选择性前体 mRNA 剪接和转录抑制。
Genes Dev. 2013 Feb 15;27(4):378-89. doi: 10.1101/gad.210708.112. Epub 2013 Feb 7.
9
Alternative splicing: a pivotal step between eukaryotic transcription and translation.可变剪接:真核转录与翻译之间的关键步骤。
Nat Rev Mol Cell Biol. 2013 Mar;14(3):153-65. doi: 10.1038/nrm3525. Epub 2013 Feb 6.
10
Pre-mRNA splicing is a determinant of nucleosome organization.前体 mRNA 剪接是核小体组织的决定因素。
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