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用于混合数据的贝叶斯高斯Copula因子模型

Bayesian Gaussian Copula Factor Models for Mixed Data.

作者信息

Murray Jared S, Dunson David B, Carin Lawrence, Lucas Joseph E

机构信息

Dept. of Statistical Science, Duke University, Durham, NC 27708 (

出版信息

J Am Stat Assoc. 2013 Jun 1;108(502):656-665. doi: 10.1080/01621459.2012.762328.

DOI:10.1080/01621459.2012.762328
PMID:23990691
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3753118/
Abstract

Gaussian factor models have proven widely useful for parsimoniously characterizing dependence in multivariate data. There is a rich literature on their extension to mixed categorical and continuous variables, using latent Gaussian variables or through generalized latent trait models acommodating measurements in the exponential family. However, when generalizing to non-Gaussian measured variables the latent variables typically influence both the dependence structure and the form of the marginal distributions, complicating interpretation and introducing artifacts. To address this problem we propose a novel class of Bayesian Gaussian copula factor models which decouple the latent factors from the marginal distributions. A semiparametric specification for the marginals based on the extended rank likelihood yields straightforward implementation and substantial computational gains. We provide new theoretical and empirical justifications for using this likelihood in Bayesian inference. We propose new default priors for the factor loadings and develop efficient parameter-expanded Gibbs sampling for posterior computation. The methods are evaluated through simulations and applied to a dataset in political science. The models in this paper are implemented in the R package bfa.

摘要

高斯因子模型已被证明在简洁地刻画多元数据中的相关性方面非常有用。关于将其扩展到混合分类变量和连续变量,有大量文献,这些文献使用潜在高斯变量或通过广义潜在特质模型来处理指数族中的测量值。然而,当推广到非高斯测量变量时,潜在变量通常会同时影响依赖结构和边际分布的形式,这使得解释变得复杂并引入了人为因素。为了解决这个问题,我们提出了一类新颖的贝叶斯高斯copula因子模型,该模型将潜在因子与边际分布解耦。基于扩展秩似然的边际半参数规范实现起来很直接,并且在计算上有很大的优势。我们为在贝叶斯推断中使用这种似然提供了新的理论和实证依据。我们为因子载荷提出了新的默认先验,并开发了用于后验计算的高效参数扩展吉布斯抽样。通过模拟对这些方法进行了评估,并将其应用于一个政治学数据集。本文中的模型在R包bfa中实现。

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本文引用的文献

1
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2
GENERALIZED DOUBLE PARETO SHRINKAGE.广义双帕累托收缩
Stat Sin. 2013 Jan 1;23(1):119-143.
3
Default Prior Distributions and Efficient Posterior Computation in Bayesian Factor Analysis.贝叶斯因子分析中的默认先验分布与高效后验计算
J Comput Graph Stat. 2009 Jun 1;18(2):306-320. doi: 10.1198/jcgs.2009.07145.
4
Compressive Sensing on Manifolds Using a Nonparametric Mixture of Factor Analyzers: Algorithm and Performance Bounds.使用因子分析器的非参数混合在流形上的压缩感知:算法与性能界限
IEEE Trans Signal Process. 2010 Dec;58(12):6140-6155. doi: 10.1109/TSP.2010.2070796.
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Sparse Bayesian infinite factor models.稀疏贝叶斯无限因子模型
Biometrika. 2011 Jun;98(2):291-306. doi: 10.1093/biomet/asr013.
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High-Dimensional Sparse Factor Modeling: Applications in Gene Expression Genomics.高维稀疏因子建模:在基因表达基因组学中的应用
J Am Stat Assoc. 2008 Dec 1;103(484):1438-1456. doi: 10.1198/016214508000000869.
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A semiparametric Bayesian approach for structural equation models.一种用于结构方程模型的半参数贝叶斯方法。
Biom J. 2010 Jun;52(3):314-32. doi: 10.1002/bimj.200900135.