• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

β-桶膜蛋白生物发生的结构见解。

Structural insight into the biogenesis of β-barrel membrane proteins.

机构信息

National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, Maryland 20892, USA.

出版信息

Nature. 2013 Sep 19;501(7467):385-90. doi: 10.1038/nature12521. Epub 2013 Sep 1.

DOI:10.1038/nature12521
PMID:23995689
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3779476/
Abstract

β-barrel membrane proteins are essential for nutrient import, signalling, motility and survival. In Gram-negative bacteria, the β-barrel assembly machinery (BAM) complex is responsible for the biogenesis of β-barrel membrane proteins, with homologous complexes found in mitochondria and chloroplasts. Here we describe the structure of BamA, the central and essential component of the BAM complex, from two species of bacteria: Neisseria gonorrhoeae and Haemophilus ducreyi. BamA consists of a large periplasmic domain attached to a 16-strand transmembrane β-barrel domain. Three structural features shed light on the mechanism by which BamA catalyses β-barrel assembly. First, the interior cavity is accessible in one BamA structure and conformationally closed in the other. Second, an exterior rim of the β-barrel has a distinctly narrowed hydrophobic surface, locally destabilizing the outer membrane. And third, the β-barrel can undergo lateral opening, suggesting a route from the interior cavity in BamA into the outer membrane.

摘要

β-桶膜蛋白对于营养物质的输入、信号转导、运动和存活至关重要。在革兰氏阴性菌中,β-桶组装机器(BAM)复合物负责β-桶膜蛋白的生物发生,在线粒体和叶绿体中也发现了同源复合物。在这里,我们描述了淋病奈瑟菌和杜克雷嗜血杆菌两种细菌中 BAM 复合物的核心和必需成分 BamA 的结构。BamA 由一个大的周质域和一个 16 链跨膜β-桶域组成。三个结构特征揭示了 BamA 催化β-桶组装的机制。首先,在一个 BamA 结构中,内部腔是可及的,而在另一个结构中则是构象封闭的。其次,β-桶的外部边缘有一个明显变窄的疏水面,局部破坏外膜的稳定性。第三,β-桶可以进行侧向开口,这表明了 BamA 内部腔进入外膜的途径。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f59f/3779476/f5fed2be5fda/nihms-512107-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f59f/3779476/5b7a9a4bea61/nihms-512107-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f59f/3779476/8c3f22ba3b6f/nihms-512107-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f59f/3779476/5405d074cfb7/nihms-512107-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f59f/3779476/f5fed2be5fda/nihms-512107-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f59f/3779476/5b7a9a4bea61/nihms-512107-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f59f/3779476/8c3f22ba3b6f/nihms-512107-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f59f/3779476/5405d074cfb7/nihms-512107-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f59f/3779476/f5fed2be5fda/nihms-512107-f0004.jpg

相似文献

1
Structural insight into the biogenesis of β-barrel membrane proteins.β-桶膜蛋白生物发生的结构见解。
Nature. 2013 Sep 19;501(7467):385-90. doi: 10.1038/nature12521. Epub 2013 Sep 1.
2
Structural and functional analysis of the β-barrel domain of BamA from Escherichia coli.大肠杆菌中BamA的β-桶状结构域的结构与功能分析
FASEB J. 2014 Jun;28(6):2677-85. doi: 10.1096/fj.13-248450. Epub 2014 Mar 11.
3
BamA β16C strand and periplasmic turns are critical for outer membrane protein insertion and assembly.BamA β16C链和周质转角对外膜蛋白的插入和组装至关重要。
Biochem J. 2017 Nov 21;474(23):3951-3961. doi: 10.1042/BCJ20170636.
4
Structural insight into the formation of lipoprotein-β-barrel complexes.脂蛋白-β-桶状复合物形成的结构见解。
Nat Chem Biol. 2020 Sep;16(9):1019-1025. doi: 10.1038/s41589-020-0575-0. Epub 2020 Jun 22.
5
Formation of a β-barrel membrane protein is catalyzed by the interior surface of the assembly machine protein BamA.β-桶膜蛋白的形成由装配机器蛋白 BamA 的内表面催化。
Elife. 2019 Nov 14;8:e49787. doi: 10.7554/eLife.49787.
6
Conformational Changes That Coordinate the Activity of BamA and BamD Allowing β-Barrel Assembly.协调BamA和BamD活性以实现β-桶组装的构象变化。
J Bacteriol. 2017 Sep 19;199(20). doi: 10.1128/JB.00373-17. Print 2017 Oct 15.
7
Bacterial outer membrane proteins assemble via asymmetric interactions with the BamA β-barrel.细菌外膜蛋白通过与 BamA β-桶的不对称相互作用进行组装。
Nat Commun. 2019 Jul 26;10(1):3358. doi: 10.1038/s41467-019-11230-9.
8
Crystal structure of BamB bound to a periplasmic domain fragment of BamA, the central component of the β-barrel assembly machine.与β-桶组装机器的核心组件BamA的周质结构域片段结合的BamB的晶体结构。
J Biol Chem. 2015 Jan 23;290(4):2126-36. doi: 10.1074/jbc.M114.584524. Epub 2014 Dec 2.
9
The structure of the β-barrel assembly machinery complex.β-桶组装机制复合体的结构。
Science. 2016 Jan 8;351(6269):180-6. doi: 10.1126/science.aad3460.
10
Conserved residues of the putative L6 loop of Escherichia coli BamA play a critical role in the assembly of β-barrel outer membrane proteins, including that of BamA itself.假定的大肠杆菌 BamA 的 L6 环的保守残基在β-桶型外膜蛋白的组装中起着关键作用,包括 BamA 本身。
J Bacteriol. 2012 Sep;194(17):4662-8. doi: 10.1128/JB.00825-12. Epub 2012 Jun 29.

引用本文的文献

1
Antibacterial macrocyclic peptides reveal a distinct mode of BamA inhibition.抗菌大环肽揭示了一种独特的BamA抑制模式。
Nat Commun. 2025 Apr 10;16(1):3395. doi: 10.1038/s41467-025-58086-w.
2
Conserved lipid-facing basic residues promote the insertion of the porin OmpC into the outer membrane.保守的面向脂质的碱性残基促进孔蛋白OmpC插入外膜。
mBio. 2025 Mar 12;16(3):e0331924. doi: 10.1128/mbio.03319-24. Epub 2025 Feb 20.
3
Mitochondrial Sorting and Assembly Machinery: Chaperoning a Moonlighting Role?线粒体分选与组装机制:伴护兼职功能?

本文引用的文献

1
Conformation-specific labeling of BamA and suppressor analysis suggest a cyclic mechanism for β-barrel assembly in Escherichia coli.BamA 的构象特异性标记和抑制因子分析提示了大肠杆菌中β-桶组装的循环机制。
Proc Natl Acad Sci U S A. 2013 Mar 26;110(13):5151-6. doi: 10.1073/pnas.1302662110. Epub 2013 Mar 11.
2
Crystallization of membrane proteins in bicelles.膜蛋白在双分子层微囊中的结晶
Methods Mol Biol. 2012;914:3-16. doi: 10.1007/978-1-62703-023-6_1.
3
Evolution of the β-barrel assembly machinery.β-桶状结构组装机器的进化。
Biochemistry. 2025 Jan 21;64(2):312-328. doi: 10.1021/acs.biochem.4c00727. Epub 2025 Jan 4.
4
Fighting Antimicrobial Resistance: Innovative Drugs in Antibacterial Research.对抗抗菌药物耐药性:抗菌研究中的创新药物
Angew Chem Int Ed Engl. 2025 Mar 3;64(10):e202414325. doi: 10.1002/anie.202414325. Epub 2025 Feb 10.
5
Native β-barrel substrates pass through two shared intermediates during folding on the BAM complex.天然β-桶基序在 BAM 复合物上折叠时要经过两个共享中间体。
Proc Natl Acad Sci U S A. 2024 Oct 15;121(42):e2409672121. doi: 10.1073/pnas.2409672121. Epub 2024 Oct 8.
6
The translocation assembly module (TAM) catalyzes the assembly of bacterial outer membrane proteins .易位组装模块(TAM)催化细菌外膜蛋白的组装。
bioRxiv. 2024 Jun 20:2024.06.20.599893. doi: 10.1101/2024.06.20.599893.
7
Autoproteolytic mechanism of CdiA toxin release reconstituted .CdiA 毒素释放的自蛋白水解机制重建。
J Bacteriol. 2024 Oct 24;206(10):e0024924. doi: 10.1128/jb.00249-24. Epub 2024 Sep 30.
8
Biogenesis of mitochondrial β-barrel membrane proteins.线粒体 β-桶膜蛋白的生物发生。
FEBS Open Bio. 2024 Oct;14(10):1595-1609. doi: 10.1002/2211-5463.13905. Epub 2024 Sep 29.
9
Protein interactions in human pathogens revealed through deep learning.通过深度学习揭示人类病原体中的蛋白质相互作用。
Nat Microbiol. 2024 Oct;9(10):2642-2652. doi: 10.1038/s41564-024-01791-x. Epub 2024 Sep 18.
10
Structural characterization of the POTRA domains from A. baumannii reveals new conformations in BamA.鲍曼不动杆菌 POTRA 结构域的结构特征揭示了 BamA 的新构象。
Structure. 2024 Nov 7;32(11):2038-2048.e3. doi: 10.1016/j.str.2024.08.013. Epub 2024 Sep 17.
Trends Microbiol. 2012 Dec;20(12):612-20. doi: 10.1016/j.tim.2012.08.006. Epub 2012 Sep 6.
4
From evolution to pathogenesis: the link between β-barrel assembly machineries in the outer membrane of mitochondria and gram-negative bacteria.从进化到发病机制:线粒体和革兰氏阴性菌外膜中β-桶状装配机器之间的联系
Int J Mol Sci. 2012;13(7):8038-8050. doi: 10.3390/ijms13078038. Epub 2012 Jun 28.
5
Conserved residues of the putative L6 loop of Escherichia coli BamA play a critical role in the assembly of β-barrel outer membrane proteins, including that of BamA itself.假定的大肠杆菌 BamA 的 L6 环的保守残基在β-桶型外膜蛋白的组装中起着关键作用,包括 BamA 本身。
J Bacteriol. 2012 Sep;194(17):4662-8. doi: 10.1128/JB.00825-12. Epub 2012 Jun 29.
6
Crystal structures of the outer membrane domain of intimin and invasin from enterohemorrhagic E. coli and enteropathogenic Y. pseudotuberculosis.肠出血性大肠杆菌和肠致病性假结核耶尔森菌的内膜外域结构蛋白 intimin 和 invasin。
Structure. 2012 Jul 3;20(7):1233-43. doi: 10.1016/j.str.2012.04.011. Epub 2012 May 31.
7
Structure of Escherichia coli BamD and its functional implications in outer membrane protein assembly.大肠杆菌BamD的结构及其在外膜蛋白组装中的功能意义
Acta Crystallogr D Biol Crystallogr. 2012 Feb;68(Pt 2):95-101. doi: 10.1107/S0907444911051031. Epub 2012 Jan 6.
8
Making a beta-barrel: assembly of outer membrane proteins in Gram-negative bacteria.形成β桶:革兰氏阴性菌中外膜蛋白的组装。
Curr Opin Microbiol. 2012 Apr;15(2):189-93. doi: 10.1016/j.mib.2011.12.007. Epub 2012 Jan 3.
9
Two-partner secretion of gram-negative bacteria: a single β-barrel protein enables transport across the outer membrane.革兰氏阴性菌的双组分分泌:一种单一的β桶状蛋白可实现跨外膜的运输。
J Biol Chem. 2012 Jan 20;287(4):2591-9. doi: 10.1074/jbc.M111.293068. Epub 2011 Dec 1.
10
Molecular basis for the activation of a catalytic asparagine residue in a self-cleaving bacterial autotransporter.细菌自转运蛋白中天冬酰胺残基自我切割活性的分子基础
J Mol Biol. 2012 Jan 6;415(1):128-42. doi: 10.1016/j.jmb.2011.10.049. Epub 2011 Nov 7.