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在粘菌变形虫的叶酸趋化性中进行高保真信息处理。

High fidelity information processing in folic acid chemotaxis of Dictyostelium amoebae.

机构信息

Laboratory of Atomic and Solid State Physics, Cornell University, Ithaca, NY 14853, USA.

出版信息

J R Soc Interface. 2013 Sep 11;10(88):20130606. doi: 10.1098/rsif.2013.0606. Print 2013 Nov 6.

Abstract

Living cells depend upon the detection of chemical signals for their existence. Eukaryotic cells can sense a concentration difference as low as a few per cent across their bodies. This process was previously suggested to be limited by the receptor-ligand binding fluctuations. Here, we first determine the chemotaxis response of Dictyostelium cells to static folic acid gradients and show that they can significantly exceed this sensitivity, responding to gradients as shallow as 0.2% across the cell body. Second, using a previously developed information theory framework, we compare the total information gained about the gradient (based on the cell response) to its upper limit: the information gained at the receptor-ligand binding step. We find that the model originally applied to cAMP sensing fails as demonstrated by the violation of the data processing inequality, i.e. the total information exceeds the information at the receptor-ligand binding step. We propose an extended model with multiple known receptor types and with cells allowed to perform several independent measurements of receptor occupancy. This does not violate the data processing inequality and implies the receptor-ligand binding noise dominates both for low- and high-chemoattractant concentrations. We also speculate that the interplay between exploration and exploitation is used as a strategy for accurate sensing of otherwise unmeasurable levels of a chemoattractant.

摘要

活细胞的存在依赖于对化学信号的检测。真核细胞能够感知其体内低至百分之几的浓度差异。这一过程以前被认为受到受体-配体结合波动的限制。在这里,我们首先确定了盘基网柄菌细胞对静态叶酸梯度的趋化反应,并表明它们可以显著超过这种敏感性,对细胞体上低至 0.2%的梯度做出反应。其次,我们使用先前开发的信息论框架,将关于梯度的总信息量(基于细胞反应)与它的上限进行比较:在受体-配体结合步骤中获得的信息量。我们发现,最初应用于 cAMP 感应的模型失败了,这表现在数据处理不等式的违反,即总信息量超过了受体-配体结合步骤中的信息量。我们提出了一个扩展的模型,其中包括多个已知的受体类型,并且允许细胞对受体占据进行几次独立的测量。这并不违反数据处理不等式,并意味着受体-配体结合噪声在低和高趋化剂浓度下都占主导地位。我们还推测,探索和利用之间的相互作用被用作一种策略,用于准确感知否则无法测量的趋化剂水平。

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Phys Rev Lett. 2012 Sep 7;109(10):108103. doi: 10.1103/PhysRevLett.109.108103. Epub 2012 Sep 5.
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Chemotaxis: finding the way forward with Dictyostelium.趋化性:用盘基网柄菌寻找前进的道路。
Trends Cell Biol. 2009 Oct;19(10):523-30. doi: 10.1016/j.tcb.2009.07.004. Epub 2009 Sep 3.
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Receptor noise limitations on chemotactic sensing.趋化传感中的受体噪声限制
Proc Natl Acad Sci U S A. 2008 Dec 9;105(49):19270-5. doi: 10.1073/pnas.0804702105. Epub 2008 Dec 8.
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Receptor noise and directional sensing in eukaryotic chemotaxis.真核生物趋化作用中的受体噪声与方向感知
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