Max Planck Institute of Colloids and Interfaces, 14424 Potsdam, Germany.
Proc Natl Acad Sci U S A. 2013 Oct 15;110(42):16754-9. doi: 10.1073/pnas.1310377110. Epub 2013 Sep 30.
Bacterial growth is crucially dependent on protein synthesis and thus on the cellular abundance of ribosomes and related proteins. Here, we show that the slow diffusion of the bulky tRNA complexes in the crowded cytoplasm imposes a physical limit on the speed of translation, which ultimately limits the rate of cell growth. To study the required allocation of ancillary translational proteins to alleviate the effect of molecular crowding, we develop a model for cell growth based on a coarse-grained partitioning of the proteome. We find that coregulation of ribosome- and tRNA-affiliated proteins is consistent with measured growth-rate dependencies and results in near-optimal allocation over a broad range of growth rates. The analysis further resolves a long-standing controversy in bacterial growth physiology concerning the growth-rate dependence of translation speed and serves as a caution against premature identification of phenomenological parameters with mechanistic processes.
细菌的生长取决于蛋白质的合成,因此依赖于核糖体和相关蛋白的细胞丰度。在这里,我们表明,体积庞大的 tRNA 复合物在拥挤的细胞质中的缓慢扩散对翻译速度施加了物理限制,最终限制了细胞生长的速度。为了研究辅助翻译蛋白的必需分配以减轻分子拥挤的影响,我们基于蛋白质组的粗粒划分开发了一个细胞生长模型。我们发现,核糖体和 tRNA 相关蛋白的共同调节与测量的生长速率依赖性一致,并在广泛的生长速率范围内导致近乎最佳的分配。该分析进一步解决了细菌生长生理学中长期存在的关于翻译速度的生长速率依赖性的争议,并告诫人们不要过早地将唯象参数与机械过程联系起来。