Klis Frans M, de Koster Chris G, Brul Stanley
Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam, The Netherlands.
Eukaryot Cell. 2014 Jan;13(1):2-9. doi: 10.1128/EC.00250-13. Epub 2013 Nov 15.
Bionumbers and bioestimates are valuable tools in biological research. Here we focus on cell wall-related bionumbers and bioestimates of the budding yeast Saccharomyces cerevisiae and the polymorphic, pathogenic fungus Candida albicans. We discuss the linear relationship between cell size and cell ploidy, the correlation between cell size and specific growth rate, the effect of turgor pressure on cell size, and the reason why using fixed cells for measuring cellular dimensions can result in serious underestimation of in vivo values. We further consider the evidence that individual buds and hyphae grow linearly and that exponential growth of the population results from regular formation of new daughter cells and regular hyphal branching. Our calculations show that hyphal growth allows C. albicans to cover much larger distances per unit of time than the yeast mode of growth and that this is accompanied by strongly increased surface expansion rates. We therefore predict that the transcript levels of genes involved in wall formation increase during hyphal growth. Interestingly, wall proteins and polysaccharides seem barely, if at all, subject to turnover and replacement. A general lesson is how strongly most bionumbers and bioestimates depend on environmental conditions and genetic background, thus reemphasizing the importance of well-defined and carefully chosen culture conditions and experimental approaches. Finally, we propose that the numbers and estimates described here offer a solid starting point for similar studies of other cell compartments and other yeast species.
生物数据和生物估算值是生物学研究中的重要工具。在此,我们聚焦于与细胞壁相关的生物数据以及出芽酵母酿酒酵母和多态性致病真菌白色念珠菌的生物估算值。我们讨论了细胞大小与细胞倍性之间的线性关系、细胞大小与比生长速率之间的相关性、膨压对细胞大小的影响,以及为何使用固定细胞测量细胞尺寸会严重低估体内值。我们进一步考虑了个体芽和菌丝呈线性生长以及群体指数生长源于新子细胞的定期形成和菌丝的定期分支的证据。我们的计算表明,菌丝生长使白色念珠菌每单位时间覆盖的距离比酵母生长模式大得多,且这伴随着表面扩展速率的大幅增加。因此,我们预测参与细胞壁形成的基因转录水平在菌丝生长过程中会增加。有趣的是,壁蛋白和多糖似乎几乎不发生周转和替换。一个普遍的教训是,大多数生物数据和生物估算值在很大程度上取决于环境条件和遗传背景,从而再次强调了明确界定和精心选择培养条件及实验方法的重要性。最后,我们提出这里描述的这些数据和估算值为其他细胞区室和其他酵母物种的类似研究提供了坚实的起点。