Bioinformatics and Medical Informatics Team, Biomedical Research Foundation, Academy of Athens, Soranou Efessiou 4, Athens 11527, Greece.
Department of Biochemistry and Biotechnology, University of Thessaly, 26 Ploutonos st., 41 221 Larissa, Greece.
Evol Bioinform Online. 2013 Dec 2;9:491-7. doi: 10.4137/EBO.S12746. eCollection 2013.
Deadenylases catalyze the shortening of the poly(A) tail at the messenger ribonucleic acid (mRNA) 3'-end in eukaryotes. Therefore, these enzymes influence mRNA decay, and constitute a major emerging group of promising anti-cancer pharmacological targets. Herein, we conducted full phylogenetic analyses of the deadenylase homologs in all available genomes in an effort to investigate evolutionary relationships between the deadenylase families and to identify invariant residues, which probably play key roles in the function of deadenylation across species. Our study includes both major Asp-Glu-Asp-Asp (DEDD) and exonuclease-endonuclease-phospatase (EEP) deadenylase superfamilies. The phylogenetic analysis has provided us with important information regarding conserved and invariant deadenylase amino acids across species. Knowledge of the phylogenetic properties and evolution of the domain of deadenylases provides the foundation for the targeted drug design in the pharmaceutical industry and modern exonuclease anti-cancer scientific research.
脱腺苷酸酶催化真核生物信使核糖核酸(mRNA)3'端多聚(A)尾的缩短。因此,这些酶影响 mRNA 的降解,构成了一组有前途的新兴抗癌药物靶点。在此,我们对所有可用基因组中的脱腺苷酸酶同源物进行了全面的系统发育分析,努力研究脱腺苷酸酶家族之间的进化关系,并鉴定出可能在物种间脱腺苷酸化功能中起关键作用的不变残基。我们的研究包括主要的 Asp-Glu-Asp-Asp(DEDD)和外切核酸酶-内切核酸酶-磷酸酶(EEP)脱腺苷酸酶超家族。系统发育分析为我们提供了关于跨物种保守和不变的脱腺苷酸酶氨基酸的重要信息。了解脱腺苷酸酶结构域的系统发育特性和进化为制药工业和现代外切核酸酶抗癌科学研究中的靶向药物设计提供了基础。