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调控 RNA:合成生物学应用中的迷人基因调控方式。

Regulatory RNAs: charming gene management styles for synthetic biology applications.

机构信息

McKetta Department of Chemical Engineering; University of Texas at Austin; Austin, TX USA.

出版信息

RNA Biol. 2013 Dec;10(12):1778-97. doi: 10.4161/rna.27102. Epub 2013 Nov 18.

DOI:10.4161/rna.27102
PMID:24356572
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3917981/
Abstract

RNAs have many important functional properties, including that they are independently controllable and highly tunable. As a result of these advantageous properties, their use in a myriad of sophisticated devices has been widely explored. Yet, the exploitation of RNAs for synthetic applications is highly dependent on the ability to characterize the many new molecules that continue to be discovered by large-scale sequencing and high-throughput screening techniques. In this review, we present an exhaustive survey of the most recent synthetic bacterial riboswitches and small RNAs while emphasizing their virtues in gene expression management. We also explore the use of these RNA components as building blocks in the RNA synthetic biology toolbox and discuss examples of synthetic RNA components used to rewire bacterial regulatory circuitry. We anticipate that this field will expand its catalog of smart devices by mimicking and manipulating natural RNA mechanisms and functions.

摘要

RNAs 具有许多重要的功能特性,包括它们具有独立性和高度可调性。由于这些有利的特性,人们广泛探索了在众多复杂设备中使用 RNA。然而,RNA 在合成应用中的利用高度依赖于对通过大规模测序和高通量筛选技术不断发现的许多新分子进行表征的能力。在这篇综述中,我们全面介绍了最近的合成细菌核糖开关和小 RNA,并强调了它们在基因表达管理方面的优点。我们还探讨了这些 RNA 组件在 RNA 合成生物学工具包中的构建模块的用途,并讨论了用于重新连接细菌调控回路的合成 RNA 组件的示例。我们预计,该领域将通过模拟和操纵天然 RNA 机制和功能来扩展其智能设备目录。

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本文引用的文献

1
Full design automation of multi-state RNA devices to program gene expression using energy-based optimization.基于能量优化的多态 RNA 器件全设计自动化,实现基因表达编程。
PLoS Comput Biol. 2013;9(8):e1003172. doi: 10.1371/journal.pcbi.1003172. Epub 2013 Aug 1.
2
Protein engineering with unnatural amino acids.非天然氨基酸的蛋白质工程。
Curr Opin Struct Biol. 2013 Aug;23(4):581-7. doi: 10.1016/j.sbi.2013.06.009. Epub 2013 Jul 5.
3
Synthetic riboswitches for the conditional control of gene expression in Streptomyces coelicolor.用于链霉菌中基因表达条件控制的合成核糖开关。
Microbiology (Reading). 2013 Jul;159(Pt 7):1416-1422. doi: 10.1099/mic.0.067322-0. Epub 2013 May 15.
4
Engineering artificial small RNAs for conditional gene silencing in Escherichia coli.工程化人工小RNA用于大肠杆菌中的条件性基因沉默
ACS Synth Biol. 2012 Jan 20;1(1):6-13. doi: 10.1021/sb200001q. Epub 2011 Aug 29.
5
Theranostic agents for intracellular gene delivery with spatiotemporal imaging.用于细胞内基因递送并具备时空成像功能的诊疗试剂。
Nano Today. 2013 Feb 1;8(1):21-38. doi: 10.1016/j.nantod.2012.12.004.
6
An engineered small RNA-mediated genetic switch based on a ribozyme expression platform.基于核酶表达平台的工程化小 RNA 介导的遗传开关。
Nucleic Acids Res. 2013 May 1;41(10):5542-52. doi: 10.1093/nar/gkt253. Epub 2013 Apr 12.
7
Discovery of posttranscriptional regulatory RNAs using next generation sequencing technologies.利用新一代测序技术发现转录后调控RNA
Methods Mol Biol. 2013;985:269-95. doi: 10.1007/978-1-62703-299-5_14.
8
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Annu Rev Chem Biomol Eng. 2013;4:69-102. doi: 10.1146/annurev-chembioeng-061312-103351. Epub 2013 Feb 13.
9
Exploring sRNA-mediated gene silencing mechanisms using artificial small RNAs derived from a natural RNA scaffold in Escherichia coli.利用源自大肠杆菌天然 RNA 支架的人工小 RNA 探索 sRNA 介导的基因沉默机制。
Nucleic Acids Res. 2013 Apr 1;41(6):3787-804. doi: 10.1093/nar/gkt061. Epub 2013 Feb 7.
10
Bacterial small RNA-based negative regulation: Hfq and its accomplices.基于细菌小 RNA 的负调控:Hfq 及其同谋。
J Biol Chem. 2013 Mar 22;288(12):7996-8003. doi: 10.1074/jbc.R112.441386. Epub 2013 Jan 29.