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使用单分子技术对细菌核苷酸切除修复的研究。

Investigation of bacterial nucleotide excision repair using single-molecule techniques.

作者信息

Van Houten Bennett, Kad Neil

机构信息

Department of Pharmacology and Chemical Biology, University of Pittsburgh Cancer Institute, University of Pittsburgh, Pittsburgh, PA, USA.

School of Biological Sciences, University of Essex, Wivenhoe Park, Colchester CO4 3SQ, UK.

出版信息

DNA Repair (Amst). 2014 Aug;20:41-48. doi: 10.1016/j.dnarep.2013.10.012. Epub 2014 Jan 25.

DOI:10.1016/j.dnarep.2013.10.012
PMID:24472181
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5053424/
Abstract

Despite three decades of biochemical and structural analysis of the prokaryotic nucleotide excision repair (NER) system, many intriguing questions remain with regard to how the UvrA, UvrB, and UvrC proteins detect, verify and remove a wide range of DNA lesions. Single-molecule techniques have begun to allow more detailed understanding of the kinetics and action mechanism of this complex process. This article reviews how atomic force microscopy and fluorescence microscopy have captured new glimpses of how these proteins work together to mediate NER.

摘要

尽管对原核生物核苷酸切除修复(NER)系统进行了三十年的生化和结构分析,但关于UvrA、UvrB和UvrC蛋白如何检测、验证和去除各种DNA损伤仍存在许多有趣的问题。单分子技术已开始使人们能够更详细地了解这一复杂过程的动力学和作用机制。本文综述了原子力显微镜和荧光显微镜如何为这些蛋白质协同介导NER的工作方式带来了新的认识。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c66e/5053424/1888164bb73a/nihms818047f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c66e/5053424/207008d8493a/nihms818047f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c66e/5053424/3be563e48af2/nihms818047f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c66e/5053424/d742ba7df239/nihms818047f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c66e/5053424/a87dcdbe2ed5/nihms818047f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c66e/5053424/b86df9d80e71/nihms818047f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c66e/5053424/1888164bb73a/nihms818047f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c66e/5053424/207008d8493a/nihms818047f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c66e/5053424/3be563e48af2/nihms818047f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c66e/5053424/d742ba7df239/nihms818047f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c66e/5053424/a87dcdbe2ed5/nihms818047f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c66e/5053424/b86df9d80e71/nihms818047f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c66e/5053424/1888164bb73a/nihms818047f6.jpg

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本文引用的文献

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Ribonucleotides as nucleotide excision repair substrates.核苷酸作为核苷酸切除修复的底物。
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2
Removal of misincorporated ribonucleotides from prokaryotic genomes: an unexpected role for nucleotide excision repair.原核基因组中错误掺入核苷酸的去除:核苷酸切除修复的一个意外作用。
PLoS Genet. 2013 Nov;9(11):e1003878. doi: 10.1371/journal.pgen.1003878. Epub 2013 Nov 7.
3
Repair of hydantoin lesions and their amine adducts in DNA by base and nucleotide excision repair.
用于原核生物基因组维持研究的单分子成像技术洞察
Chem Biomed Imaging. 2024 Jun 18;2(9):595-614. doi: 10.1021/cbmi.4c00037. eCollection 2024 Sep 23.
4
Single molecule iSCAT imaging reveals a fast, energy efficient search mode for the DNA repair protein UvrA.单分子 iSCAT 成像揭示了 DNA 修复蛋白 UvrA 的一种快速、节能的搜索模式。
Nanoscale. 2022 Mar 31;14(13):5174-5184. doi: 10.1039/d1nr06913f.
5
Bacterial DNA excision repair pathways.细菌 DNA 切除修复途径。
Nat Rev Microbiol. 2022 Aug;20(8):465-477. doi: 10.1038/s41579-022-00694-0. Epub 2022 Feb 24.
6
Bacterial phenotypic heterogeneity in DNA repair and mutagenesis.细菌在 DNA 修复和诱变中的表型异质性。
Biochem Soc Trans. 2020 Apr 29;48(2):451-462. doi: 10.1042/BST20190364.
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Proteomic Response of Three Marine Ammonia-Oxidizing Archaea to Hydrogen Peroxide and Their Metabolic Interactions with a Heterotrophic Alphaproteobacterium.三种海洋氨氧化古菌对过氧化氢的蛋白质组学响应及其与异养α-变形菌的代谢相互作用
mSystems. 2019 Jun 25;4(4):e00181-19. doi: 10.1128/mSystems.00181-19.
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Guidelines for DNA recombination and repair studies: Mechanistic assays of DNA repair processes.DNA重组与修复研究指南:DNA修复过程的机制分析
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Nucleic Acids Res. 2012 Sep 1;40(17):8743-58. doi: 10.1093/nar/gks633. Epub 2012 Jun 30.