• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

DNA重组与修复研究指南:DNA修复过程的机制分析

Guidelines for DNA recombination and repair studies: Mechanistic assays of DNA repair processes.

作者信息

Klein Hannah L, Ang Kenny K H, Arkin Michelle R, Beckwitt Emily C, Chang Yi-Hsuan, Fan Jun, Kwon Youngho, Morten Michael J, Mukherjee Sucheta, Pambos Oliver J, El Sayyed Hafez, Thrall Elizabeth S, Vieira-da-Rocha João P, Wang Quan, Wang Shuang, Yeh Hsin-Yi, Biteen Julie S, Chi Peter, Heyer Wolf-Dietrich, Kapanidis Achillefs N, Loparo Joseph J, Strick Terence R, Sung Patrick, Van Houten Bennett, Niu Hengyao, Rothenberg Eli

机构信息

New York University School of Medicine, Department of Biochemistry and Molecular Pharmacology, New York, NY 10016, USA.

Small Molecule Discovery Center and Department of Pharmaceutical Chemistry, University of California, San Francisco, California 94143, USA.

出版信息

Microb Cell. 2019 Jan 7;6(1):65-101. doi: 10.15698/mic2019.01.665.

DOI:10.15698/mic2019.01.665
PMID:30652106
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6334232/
Abstract

Genomes are constantly in flux, undergoing changes due to recombination, repair and mutagenesis. , many of such changes are studies using reporters for specific types of changes, or through cytological studies that detect changes at the single-cell level. Single molecule assays, which are reviewed here, can detect transient intermediates and dynamics of events. Biochemical assays allow detailed investigation of the DNA and protein activities of each step in a repair, recombination or mutagenesis event. Each type of assay is a powerful tool but each comes with its particular advantages and limitations. Here the most commonly used assays are reviewed, discussed, and presented as the guidelines for future studies.

摘要

基因组处于不断变化之中,由于重组、修复和诱变而发生改变。许多此类变化是通过针对特定类型变化的报告基因进行研究,或者通过在单细胞水平检测变化的细胞学研究来进行的。本文所综述的单分子检测方法能够检测瞬时中间体和事件动态。生化检测方法允许对修复、重组或诱变事件中每一步的DNA和蛋白质活性进行详细研究。每种检测方法都是一种强大的工具,但每种方法都有其独特的优点和局限性。本文对最常用的检测方法进行了综述、讨论,并作为未来研究的指南呈现。

相似文献

1
Guidelines for DNA recombination and repair studies: Mechanistic assays of DNA repair processes.DNA重组与修复研究指南:DNA修复过程的机制分析
Microb Cell. 2019 Jan 7;6(1):65-101. doi: 10.15698/mic2019.01.665.
2
Guidelines for DNA recombination and repair studies: Cellular assays of DNA repair pathways.DNA重组与修复研究指南:DNA修复途径的细胞分析
Microb Cell. 2019 Jan 7;6(1):1-64. doi: 10.15698/mic2019.01.664.
3
Pathways and assays for DNA double-strand break repair by homologous recombination.同源重组修复 DNA 双链断裂的途径和分析。
Acta Biochim Biophys Sin (Shanghai). 2019 Sep 6;51(9):879-889. doi: 10.1093/abbs/gmz076.
4
Super-resolution mapping of cellular double-strand break resection complexes during homologous recombination.细胞同源重组双链断裂切除复合物的超分辨率图谱绘制。
Proc Natl Acad Sci U S A. 2021 Mar 16;118(11). doi: 10.1073/pnas.2021963118.
5
Double-strand break repair assays determine pathway choice and structure of gene conversion events in Drosophila melanogaster.双链断裂修复分析可确定黑腹果蝇中基因转换事件的途径选择和结构。
G3 (Bethesda). 2014 Mar 20;4(3):425-32. doi: 10.1534/g3.113.010074.
6
Repair of protein-linked DNA double strand breaks: Using the adenovirus genome as a model substrate in cell-based assays.蛋白质连接的 DNA 双链断裂修复:在基于细胞的测定中使用腺病毒基因组作为模型底物。
DNA Repair (Amst). 2019 Feb;74:80-90. doi: 10.1016/j.dnarep.2018.12.001. Epub 2018 Dec 10.
7
BRG1 promotes the repair of DNA double-strand breaks by facilitating the replacement of RPA with RAD51.BRG1通过促进RAD51取代RPA来促进DNA双链断裂的修复。
J Cell Sci. 2015 Jan 15;128(2):317-30. doi: 10.1242/jcs.159103. Epub 2014 Nov 13.
8
The Role of CtIP in Homology-Directed Repair of DNA Double-Strand Breaks.CtIP 在 DNA 双链断裂同源定向修复中的作用。
Genes (Basel). 2021 Sep 16;12(9):1430. doi: 10.3390/genes12091430.
9
Repair of endonuclease-induced double-strand breaks in Saccharomyces cerevisiae: essential role for genes associated with nonhomologous end-joining.酿酒酵母中核酸内切酶诱导的双链断裂修复:与非同源末端连接相关基因的重要作用。
Genetics. 1999 Aug;152(4):1513-29. doi: 10.1093/genetics/152.4.1513.
10
Assaying double-strand break repair pathway choice in mammalian cells using a targeted endonuclease or the RAG recombinase.利用靶向核酸内切酶或RAG重组酶检测哺乳动物细胞中的双链断裂修复途径选择
Methods Enzymol. 2006;409:524-40. doi: 10.1016/S0076-6879(05)09031-2.

引用本文的文献

1
The Rad51 paralog complex Rad55-Rad57 acts as a molecular chaperone during homologous recombination.Rad51 同源物复合物 Rad55-Rad57 在同源重组过程中充当分子伴侣。
Mol Cell. 2021 Mar 4;81(5):1043-1057.e8. doi: 10.1016/j.molcel.2020.12.019. Epub 2021 Jan 8.
2
The Prognostic Value of Deficient Mismatch Repair in Stage II-IVa Nasopharyngeal Carcinoma in the Era of IMRT.调强放疗时代 II-IVa 期鼻咽癌中错配修复缺陷的预后价值。
Sci Rep. 2020 Jun 16;10(1):9690. doi: 10.1038/s41598-020-66678-3.
3
Assays to Study Mitotic Recombination Outcomes.

本文引用的文献

1
Single-molecule imaging reveals multiple pathways for the recruitment of translesion polymerases after DNA damage.单分子成像揭示了 DNA 损伤后跨损伤聚合酶募集的多种途径。
Nat Commun. 2017 Dec 18;8(1):2170. doi: 10.1038/s41467-017-02333-2.
2
Recruitment of UvrBC complexes to UV-induced damage in the absence of UvrA increases cell survival.在缺乏 UvrA 的情况下,UvrBC 复合物招募到 UV 诱导的损伤中会增加细胞存活率。
Nucleic Acids Res. 2018 Feb 16;46(3):1256-1265. doi: 10.1093/nar/gkx1244.
3
A change of view: homologous recombination at single-molecule resolution.
研究有丝分裂重组结果的测定法。
Genes (Basel). 2020 Jan 10;11(1):79. doi: 10.3390/genes11010079.
4
Partner Choice in Spontaneous Mitotic Recombination in Wild Type and Homologous Recombination Mutants of .野生型和同源重组突变体中自发有丝分裂重组的伙伴选择。
G3 (Bethesda). 2019 Nov 5;9(11):3631-3644. doi: 10.1534/g3.119.400516.
5
MiR-7-5p-mediated downregulation of PARP1 impacts DNA homologous recombination repair and resistance to doxorubicin in small cell lung cancer.miR-7-5p 下调 PARP1 影响小细胞肺癌中 DNA 同源重组修复和多柔比星耐药性。
BMC Cancer. 2019 Jun 18;19(1):602. doi: 10.1186/s12885-019-5798-7.
视角的转变:单分子分辨率下的同源重组。
Nat Rev Genet. 2018 Apr;19(4):191-207. doi: 10.1038/nrg.2017.92. Epub 2017 Dec 11.
4
Visualizing bacterial DNA replication and repair with molecular resolution.用分子分辨率可视化细菌 DNA 复制和修复。
Curr Opin Microbiol. 2018 Jun;43:38-45. doi: 10.1016/j.mib.2017.11.009. Epub 2017 Dec 1.
5
Role of the Pif1-PCNA Complex in Pol δ-Dependent Strand Displacement DNA Synthesis and Break-Induced Replication.Pif1-PCNA 复合物在 Pol δ 依赖性链置换 DNA 合成和断裂诱导复制中的作用。
Cell Rep. 2017 Nov 14;21(7):1707-1714. doi: 10.1016/j.celrep.2017.10.079.
6
PARP1 changes from three-dimensional DNA damage searching to one-dimensional diffusion after auto-PARylation or in the presence of APE1.聚(ADP-核糖)聚合酶1(PARP1)在自身聚(ADP-核糖)化后或在脱嘌呤嘧啶核酸内切酶1(APE1)存在的情况下,从三维DNA损伤搜索转变为一维扩散。
Nucleic Acids Res. 2017 Dec 15;45(22):12834-12847. doi: 10.1093/nar/gkx1047.
7
BRCA1-BARD1 promotes RAD51-mediated homologous DNA pairing.BRCA1-BARD1促进RAD51介导的同源DNA配对。
Nature. 2017 Oct 19;550(7676):360-365. doi: 10.1038/nature24060. Epub 2017 Oct 4.
8
DNA Ligase IV Guides End-Processing Choice during Nonhomologous End Joining.DNA 连接酶 IV 指导非同源末端连接过程中的末端加工选择。
Cell Rep. 2017 Sep 19;20(12):2810-2819. doi: 10.1016/j.celrep.2017.08.091.
9
A general method to fine-tune fluorophores for live-cell and in vivo imaging.一种用于活细胞和体内成像的荧光团微调通用方法。
Nat Methods. 2017 Oct;14(10):987-994. doi: 10.1038/nmeth.4403. Epub 2017 Sep 4.
10
MUS81 nuclease activity is essential for replication stress tolerance and chromosome segregation in BRCA2-deficient cells.MUS81 核酸酶活性对于 BRCA2 缺陷细胞的复制应激耐受和染色体分离至关重要。
Nat Commun. 2017 Jul 17;8:15983. doi: 10.1038/ncomms15983.