促进植物生长的黏质沙雷氏菌S4的非连续完整基因组序列
Non-contiguous finished genome sequence of plant-growth promoting Serratia proteamaculans S4.
作者信息
Neupane Saraswoti, Goodwin Lynne A, Högberg Nils, Kyrpides Nikos C, Alström Sadhna, Bruce David, Quintana Beverly, Munk Christine, Daligault Hajnalka, Teshima Hazuki, Davenport Karen, Reitenga Krista, Green Lance, Chain Patrick, Erkkila Tracy, Gu Wei, Zhang Xiaojing, Xu Yan, Kunde Yulia, Chertkov Olga, Han James, Han Cliff, Detter John C, Ivanova Natalia, Pati Amrita, Chen Amy, Szeto Ernest, Mavromatis Kostas, Huntemann Marcel, Nolan Matt, Pitluck Sam, Deshpande Shweta, Markowitz Victor, Pagani Ioanna, Klenk Hans-Peter, Woyke Tanja, Finlay Roger D
机构信息
Uppsala BioCenter, Department of Forest Mycology and Plant Pathology, Swedish University of Agricultural Sciences, Uppsala, Sweden.
Los Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
出版信息
Stand Genomic Sci. 2013 Jul 30;8(3):441-9. doi: 10.4056/sigs.4027757.
Serratia proteamaculans S4 (previously Serratia sp. S4), isolated from the rhizosphere of wild Equisetum sp., has the ability to stimulate plant growth and to suppress the growth of several soil-borne fungal pathogens of economically important crops. Here we present the non-contiguous, finished genome sequence of S. proteamaculans S4, which consists of a 5,324,944 bp circular chromosome and a 129,797 bp circular plasmid. The chromosome contains 5,008 predicted genes while the plasmid comprises 134 predicted genes. In total, 4,993 genes are assigned as protein-coding genes. The genome consists of 22 rRNA genes, 82 tRNA genes and 58 pseudogenes. This genome is a part of the project "Genomics of four rapeseed plant growth-promoting bacteria with antagonistic effect on plant pathogens" awarded through the 2010 DOE-JGI's Community Sequencing Program.
从野生木贼属植物根际分离得到的黏质沙雷氏菌S4（以前称为沙雷氏菌属S4）具有促进植物生长以及抑制几种对经济作物重要的土传真菌病原体生长的能力。在此，我们展示了黏质沙雷氏菌S4的非连续完成基因组序列，其由一条5,324,944 bp的环状染色体和一条129,797 bp的环状质粒组成。染色体包含5,008个预测基因，而质粒包含134个预测基因。总共4,993个基因被指定为蛋白质编码基因。该基因组由22个rRNA基因、82个tRNA基因和58个假基因组成。这个基因组是通过2010年美国能源部联合基因组研究所的社区测序计划授予的“对植物病原体具有拮抗作用的四种油菜籽植物促生细菌的基因组学”项目的一部分。
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