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嗜热红色微菌模式菌株(DSM 16684(T))的基因组序列,玫瑰杆菌进化枝的一个成员。

Genome sequence of the reddish-pigmented Rubellimicrobium thermophilum type strain (DSM 16684(T)), a member of the Roseobacter clade.

作者信息

Fiebig Anne, Riedel Thomas, Gronow Sabine, Petersen Jörn, Klenk Hans-Peter, Göker Markus

机构信息

Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.

UPMC Université Paris 6, UMR 7621, Observatoire Océanologique, Banyuls-sur-Mer, France ; CNRS, UMR 7621, LOMIC, Observatoire Océanologique, Banyuls-sur-Mer, France.

出版信息

Stand Genomic Sci. 2013 Jul 30;8(3):480-90. doi: 10.4056/sigs.4247911.

Abstract

Rubellimicrobium thermophilum Denner et al. 2006 is the type species of the genus Rubellimicrobium, a representative of the Roseobacter clade within the Rhodobacteraceae. Members of this clade were shown to be abundant especially in coastal and polar waters, but were also found in microbial mats and sediments. They are metabolically versatile and form a physiologically heterogeneous group within the Alphaproteobacteria. Strain C-Ivk-R2A-2(T) was isolated from colored deposits in a pulp dryer; however, its natural habitat is so far unknown. Here we describe the features of this organism, together with the draft genome sequence and annotation and novel aspects of its phenotype. The 3,161,245 bp long genome contains 3,243 protein-coding and 45 RNA genes.

摘要

嗜热红微菌属(Rubellimicrobium)丹尼等人于2006年发现,是嗜热红微菌属的模式种,属于红杆菌科(Rhodobacteraceae)内玫瑰杆菌类群的代表。该类群成员尤其在沿海和极地水域大量存在,但在微生物垫和沉积物中也有发现。它们具有多种代谢功能,在α-变形菌纲内形成了一个生理特性各异的群体。菌株C-Ivk-R2A-2(T)是从纸浆干燥机中的有色沉积物中分离出来的;然而,其天然栖息地至今仍不明确。在此,我们描述了该生物体的特征,以及基因组草图序列、注释和其表型的新方面。该基因组长度为3,161,245 bp,包含3,243个蛋白质编码基因和45个RNA基因。

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