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1
Phylogenetic evidence for tertiary interactions in 16S-like ribosomal RNA.16S 样核糖体 RNA 三级相互作用的系统发育证据。
Nucleic Acids Res. 1989 Mar 25;17(6):2215-21. doi: 10.1093/nar/17.6.2215.
2
Further characterization of the extremely small mitochondrial ribosomal RNAs from trypanosomes: a detailed comparison of the 9S and 12S RNAs from Crithidia fasciculata and Trypanosoma brucei with rRNAs from other organisms.锥虫超小线粒体核糖体RNA的进一步特征分析：纤细短膜虫和布氏锥虫9S及12S RNA与其他生物rRNA的详细比较
Nucleic Acids Res. 1985 Jun 11;13(11):4171-90. doi: 10.1093/nar/13.11.4171.
3
The major transcripts of the kinetoplast DNA of Trypanosoma brucei are very small ribosomal RNAs.布氏锥虫动基体DNA的主要转录本是非常小的核糖体RNA。
Nucleic Acids Res. 1983 Jan 11;11(1):105-25. doi: 10.1093/nar/11.1.105.
4
Mechanism of translation based on intersubunit complementarities of ribosomal RNAs and tRNAs.基于核糖体RNA和转运RNA亚基间互补性的翻译机制。
J Theor Biol. 2007 Apr 21;245(4):644-68. doi: 10.1016/j.jtbi.2006.11.004. Epub 2006 Nov 15.
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Ribosomal protein L25 from Trypanosoma brucei: phylogeny and molecular co-evolution of an rRNA-binding protein and its rRNA binding site.布氏锥虫的核糖体蛋白L25：一种rRNA结合蛋白及其rRNA结合位点的系统发育和分子协同进化
Nucleic Acids Res. 1993 Oct 25;21(21):4936-40. doi: 10.1093/nar/21.21.4936.
6
Nucleotide sequence of an exceptionally long 5.8S ribosomal RNA from Crithidia fasciculata.来自纤细短膜虫的超长5.8S核糖体RNA的核苷酸序列。
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8
The 5S ribosomal RNA genes of Crithidia fasciculata.克氏锥虫的5S核糖体RNA基因。
Mol Biochem Parasitol. 1990 Jan 15;38(2):295-8. doi: 10.1016/0166-6851(90)90033-i.
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Identification and sequence analysis of the ribosomal DNA promoter region of Crithidia fasciculata.纤细短膜虫核糖体DNA启动子区域的鉴定与序列分析。
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Collection of small subunit (16S- and 16S-like) ribosomal RNA structures: 1994.小亚基（16S及类似16S）核糖体RNA结构集：1994年。
Nucleic Acids Res. 1994 Sep;22(17):3502-7. doi: 10.1093/nar/22.17.3502.

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1
Evolutionary rates vary among rRNA structural elements.rRNA的各个结构元件的进化速率各不相同。
Nucleic Acids Res. 2007;35(10):3339-54. doi: 10.1093/nar/gkm101. Epub 2007 Apr 27.
2
The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs.比较RNA网站（CRW）：一个关于核糖体RNA、内含子RNA及其他RNA的比较序列和结构信息的在线数据库。
BMC Bioinformatics. 2002;3:2. doi: 10.1186/1471-2105-3-2. Epub 2002 Jan 17.
3
Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective.从不断演变的核糖体RNA中汲取的经验教训：从比较的角度看16S和23S核糖体RNA结构
Microbiol Rev. 1994 Mar;58(1):10-26. doi: 10.1128/mr.58.1.10-26.1994.
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Phylogenetically preserved inter-rRNA base pairs: involvement in ribosomal subunit association.系统发育上保守的核糖体RNA碱基对：参与核糖体亚基的结合
Nucleic Acids Res. 1994 Sep 25;22(19):3936-42. doi: 10.1093/nar/22.19.3936.
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Higher order structural elements in ribosomal RNAs: pseudo-knots and the use of noncanonical pairs.核糖体RNA中的高阶结构元件：假结和非经典碱基对的应用。
Proc Natl Acad Sci U S A. 1990 Jan;87(2):663-7. doi: 10.1073/pnas.87.2.663.
6
Alternative base pairing between 5'- and 3'-terminal sequences of small subunit RNA may provide the basis of a conformational switch of the small ribosomal subunit.小亚基RNA 5'端和3'端序列之间的替代性碱基配对可能为小核糖体亚基构象转换提供基础。
Nucleic Acids Res. 1990 Jul 25;18(14):4083-8. doi: 10.1093/nar/18.14.4083.
7
An overview of the secondary structure of the V4 region of eukaryotic small-subunit ribosomal RNA.真核生物小亚基核糖体RNA V4区域二级结构概述
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8
The 5'-untranslated region of picornaviral genomes.小核糖核酸病毒基因组的5'非翻译区。
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9
The path of mRNA through the Escherichia coli ribosome; site-directed cross-linking of mRNA analogues carrying a photo-reactive label at various points 3' to the decoding site.信使核糖核酸（mRNA）通过大肠杆菌核糖体的途径；对在解码位点3'端不同位置携带光反应性标记的mRNA类似物进行定点交联。
EMBO J. 1991 Aug;10(8):2195-202. doi: 10.1002/j.1460-2075.1991.tb07755.x.
10
Homologies between the contiguous and fragmented rRNAs of the two Plasmodium falciparum extrachromosomal DNAs are limited to core sequences.两种恶性疟原虫染色体外DNA的连续和片段化rRNA之间的同源性仅限于核心序列。
Nucleic Acids Res. 1992 Feb 25;20(4):879-87. doi: 10.1093/nar/20.4.879.

本文引用的文献

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STRUCTURE OF A RIBONUCLEIC ACID.核糖核酸的结构
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Secondary structure model for 23S ribosomal RNA.23S核糖体RNA的二级结构模型
Nucleic Acids Res. 1981 Nov 25;9(22):6167-89. doi: 10.1093/nar/9.22.6167.
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The 3'-terminal region of mosquito mitochondrial small ribosomal subunit RNA: sequence and localization of methylated residues.蚊子线粒体小核糖体亚基RNA的3'末端区域：甲基化残基的序列与定位
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Topography of rna in the ribosome localization of the 16 s rna 5' end by immune electron microscopy.核糖体中RNA的拓扑结构：通过免疫电子显微镜对16 s rRNA 5'端进行定位
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Ribosome structure. Localization of 7-methylguanosine in the small subunits of Escherichia coli and chloroplast ribosomes by immunoelectron microscopy.核糖体结构。通过免疫电子显微镜对大肠杆菌和叶绿体核糖体小亚基中7-甲基鸟苷的定位。
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Sequence of U1 RNA from Drosophila melanogaster: implications for U1 secondary structure and possible involvement in splicing.黑腹果蝇U1 RNA的序列：对U1二级结构的影响以及可能参与剪接的情况。
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Secondary structure of 16S ribosomal RNA.16S核糖体RNA的二级结构
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Detailed molecular model for transfer ribonucleic acid.转移核糖核酸的详细分子模型。
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Nucleotide sequence of 5 S RNA from Torulopsis utilis.产朊假丝酵母5S RNA的核苷酸序列
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Comparative anatomy of 16-S-like ribosomal RNA.16S 样核糖体 RNA 的比较解剖学
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16S 样核糖体 RNA 三级相互作用的系统发育证据。

Phylogenetic evidence for tertiary interactions in 16S-like ribosomal RNA.

作者信息

Haselman T, Camp D G, Fox G E

机构信息

Department of Biochemical and Biophysical Sciences, University of Houston, TX 77204-5500.

出版信息

Nucleic Acids Res. 1989 Mar 25;17(6):2215-21. doi: 10.1093/nar/17.6.2215.

DOI:10.1093/nar/17.6.2215
PMID:2468130
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC317591/
Abstract

Major efforts are underway to elucidate the spatial distribution of ribosomal RNAs (rRNAs) in the ribosome. An especially informative approach is the identification of likely base-base tertiary interactions within the RNA by phylogenetic comparison. Herein evidence is presented for three heretofore unrecognized candidate tertiary interactions, G506/C525, C779/G803 and A994/U1380 (1) in 16S-like rRNAs. This brings to eight the number of such interactions that are strongly supported by phylogenetic evidence. The three newly identified interactions further define the folding within domains II and III of 16S-like rRNA. No interactions have yet been found that would serve to orient the domains relative to one another.

摘要

目前正在做出重大努力来阐明核糖体中核糖体RNA（rRNA）的空间分布。一种特别有用的方法是通过系统发育比较来识别RNA内可能的碱基-碱基三级相互作用。本文提供了证据，证明在16S样rRNA中存在三种迄今未被识别的候选三级相互作用，即G506/C525、C779/G803和A994/U1380（1）。这使得系统发育证据强烈支持的此类相互作用的数量增加到了八个。新发现的这三种相互作用进一步确定了16S样rRNA结构域II和III内的折叠情况。尚未发现有相互作用可用于使这些结构域相互定向。